SNP Detail For rs1401492
1.Mapping Information
Human SNP ID rs1401492
Human chromosome chr3
Human SNP position 53646097
Pig chromosome chr13
Pig SNP position 38814716
2.Annotation Information
PubMed ID21901158
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/21901158
StudyGenome-wide detection of allele specific copy number variation associated with insulin resistance in African Americans from the HyperGEN study.
Disease/TraitInsulin resistance/response
Initial sample1,040 African American individuals
Replication sampleNA
Region3p21.1
Chromosome idchr3
Chromosome position53646097
Reported geneCACNA1D
Mapped geneCACNA1D
Upstream gene id
Downstream gene id
SNP gene ids776
Upstream gene distance
Downstream gene distance
SNP risk allelers1401492-C
SNPsrs1401492
Merged0
SNP id current1401492
Contextintron_variant
Intergenic0
Allele frequency0.07
P value0.000003
Pvalue mlog5.52287874528033
P value text(Insulin)
Or beta15
%95 Ci[9.00 - 21.00] % decrease
PlatformAffymetrix [872243]
CNVN
Mapped traitinsulin resistance
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0002614
Study accessionGCST001208
PubMed ID21901158
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/21901158
StudyGenome-wide detection of allele specific copy number variation associated with insulin resistance in African Americans from the HyperGEN study.
Disease/TraitInsulin resistance/response
Initial sample1,040 African American individuals
Replication sampleNA
Region3p21.1
Chromosome idchr3
Chromosome position53646097
Reported geneCACNA1D
Mapped geneCACNA1D
Upstream gene id
Downstream gene id
SNP gene ids776
Upstream gene distance
Downstream gene distance
SNP risk allelers1401492-C
SNPsrs1401492
Merged0
SNP id current1401492
Contextintron_variant
Intergenic0
Allele frequency0.07
P value0.000005
Pvalue mlog5.30102999566398
P value text(HOMA-IR)
Or beta16
%95 Ci[9.00 - 22.00] % decrease
PlatformAffymetrix [872243]
CNVN
Mapped traitinsulin resistance
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0002614
Study accessionGCST001208