Human SNP ID | rs1401492 |
---|---|
Human chromosome | chr3 |
Human SNP position | 53646097 |
Pig chromosome | chr13 |
Pig SNP position | 38814716 |
PubMed ID | 21901158 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/21901158 |
Study | Genome-wide detection of allele specific copy number variation associated with insulin resistance in African Americans from the HyperGEN study. |
Disease/Trait | Insulin resistance/response |
Initial sample | 1,040 African American individuals |
Replication sample | NA |
Region | 3p21.1 |
Chromosome id | chr3 |
Chromosome position | 53646097 |
Reported gene | CACNA1D |
Mapped gene | CACNA1D |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 776 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1401492-C |
SNPs | rs1401492 |
Merged | 0 |
SNP id current | 1401492 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.07 |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | (Insulin) |
Or beta | 15 |
%95 Ci | [9.00 - 21.00] % decrease |
Platform | Affymetrix [872243] |
CNV | N |
Mapped trait | insulin resistance |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0002614 |
Study accession | GCST001208 |
PubMed ID | 21901158 |
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/21901158 |
Study | Genome-wide detection of allele specific copy number variation associated with insulin resistance in African Americans from the HyperGEN study. |
Disease/Trait | Insulin resistance/response |
Initial sample | 1,040 African American individuals |
Replication sample | NA |
Region | 3p21.1 |
Chromosome id | chr3 |
Chromosome position | 53646097 |
Reported gene | CACNA1D |
Mapped gene | CACNA1D |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 776 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1401492-C |
SNPs | rs1401492 |
Merged | 0 |
SNP id current | 1401492 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.07 |
P value | 0.000005 |
Pvalue mlog | 5.30102999566398 |
P value text | (HOMA-IR) |
Or beta | 16 |
%95 Ci | [9.00 - 22.00] % decrease |
Platform | Affymetrix [872243] |
CNV | N |
Mapped trait | insulin resistance |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0002614 |
Study accession | GCST001208 |