SNP Detail For rs139872551
1.Mapping Information
Human SNP ID rs139872551
Human chromosome chr6
Human SNP position 53373738
Pig chromosome chr7
Pig SNP position 134641942
2.Annotation Information
PubMed ID26634245
JournalBMC Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26634245
StudyA genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.
Disease/TraitPost bronchodilator FEV1/FVC ratio in COPD
Initial sample5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases
Replication sampleNA
Region6p12.1
Chromosome idchr6
Chromosome position53373738
Reported geneIntergenic
Mapped geneRPL31P33 - LOC100130403
Upstream gene id442218
Downstream gene id100130403
SNP gene ids
Upstream gene distance4712
Downstream gene distance4694
SNP risk allelers139872551-C
SNPsrs139872551
Merged0
SNP id current139872551
Contextupstream_gene_variant
Intergenic1
Allele frequency0.997
P value0.000003
Pvalue mlog5.52287874528033
P value text(AA)
Or beta0.297
%95 CiNR unit increase
PlatformIllumina [NR] (imputed)
CNVN
Mapped traitresponse to bronchodilator, chronic obstructive pulmonary disease, FEV/FEC ratio
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0097366, http://www.ebi.ac.uk/efo/EFO_0000341, http://www.ebi.ac.uk/efo/EFO_0004713
Study accessionGCST003265