Human SNP ID | rs139872551 |
---|---|
Human chromosome | chr6 |
Human SNP position | 53373738 |
Pig chromosome | chr7 |
Pig SNP position | 134641942 |
PubMed ID | 26634245 |
---|---|
Journal | BMC Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26634245 |
Study | A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry. |
Disease/Trait | Post bronchodilator FEV1/FVC ratio in COPD |
Initial sample | 5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases |
Replication sample | NA |
Region | 6p12.1 |
Chromosome id | chr6 |
Chromosome position | 53373738 |
Reported gene | Intergenic |
Mapped gene | RPL31P33 - LOC100130403 |
Upstream gene id | 442218 |
Downstream gene id | 100130403 |
SNP gene ids | |
Upstream gene distance | 4712 |
Downstream gene distance | 4694 |
SNP risk allele | rs139872551-C |
SNPs | rs139872551 |
Merged | 0 |
SNP id current | 139872551 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.997 |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | (AA) |
Or beta | 0.297 |
%95 Ci | NR unit increase |
Platform | Illumina [NR] (imputed) |
CNV | N |
Mapped trait | response to bronchodilator, chronic obstructive pulmonary disease, FEV/FEC ratio |
Mapped trait URI | http://purl.obolibrary.org/obo/GO_0097366, http://www.ebi.ac.uk/efo/EFO_0000341, http://www.ebi.ac.uk/efo/EFO_0004713 |
Study accession | GCST003265 |