SNP Detail For rs139817151
1.Mapping Information
Human SNP ID rs139817151
Human chromosome chr5
Human SNP position 40967607
Pig chromosome chr1
Pig SNP position 309568587
2.Annotation Information
PubMed ID26634245
JournalBMC Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26634245
StudyA genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.
Disease/TraitPost bronchodilator FEV1/FVC ratio in COPD
Initial sample5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases
Replication sampleNA
Region5p13.1
Chromosome idchr5
Chromosome position40967607
Reported geneC7
Mapped geneC7
Upstream gene id
Downstream gene id
SNP gene ids730
Upstream gene distance
Downstream gene distance
SNP risk allelers139817151-G
SNPsrs139817151
Merged0
SNP id current139817151
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequency0.997
P value0.000005
Pvalue mlog5.30102999566398
P value text(AA)
Or beta0.249
%95 CiNR unit increase
PlatformIllumina [NR] (imputed)
CNVN
Mapped traitresponse to bronchodilator, chronic obstructive pulmonary disease, FEV/FEC ratio
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0097366, http://www.ebi.ac.uk/efo/EFO_0000341, http://www.ebi.ac.uk/efo/EFO_0004713
Study accessionGCST003265