SNP Detail For rs1398024
1.Mapping Information
Human SNP ID rs1398024
Human chromosome chr10
Human SNP position 23376509
Pig chromosome chr10
Pig SNP position 57318511
2.Annotation Information
PubMed ID18723019
JournalGastroenterology
Linkwww.ncbi.nlm.nih.gov/pubmed/18723019
StudyGenome-wide association analysis in sarcoidosis and Crohn__s disease unravels a common susceptibility locus on 10p12.2.
Disease/TraitCrohn__s disease and sarcoidosis (combined)
Initial sample382 European ancestry Crohn__s disease cases, 398 European ancestry Sarcoidosis cases, 394 European ancestry controls
Replication sample660 European ancestry Crohn__s disease cases, 657 European ancestry Sarcoidosis cases, 1,091 European ancestry controls
Region10p12.2
Chromosome idchr10
Chromosome position23376509
Reported geneC10orf67
Mapped geneLOC105376453 - MIR1254-2
Upstream gene id105376453
Downstream gene id100616217
SNP gene ids
Upstream gene distance17443
Downstream gene distance16896
SNP risk allelers1398024-A
SNPsrs1398024
Merged0
SNP id current1398024
Contextregulatory_region_variant
Intergenic1
Allele frequency0.25
P value0.000004
Pvalue mlog5.39794000867203
P value text
Or beta1.23
%95 Ci[1.04-1.45]
PlatformAffymetrix [83360]
CNVN
Mapped traitSarcoidosis, Crohn__s disease
Mapped trait URIhttp://www.orpha.net/ORDO/Orphanet_797, http://www.ebi.ac.uk/efo/EFO_0000384
Study accessionGCST000212