Human SNP ID | rs1398024 |
---|---|
Human chromosome | chr10 |
Human SNP position | 23376509 |
Pig chromosome | chr10 |
Pig SNP position | 57318511 |
PubMed ID | 18723019 |
---|---|
Journal | Gastroenterology |
Link | www.ncbi.nlm.nih.gov/pubmed/18723019 |
Study | Genome-wide association analysis in sarcoidosis and Crohn__s disease unravels a common susceptibility locus on 10p12.2. |
Disease/Trait | Crohn__s disease and sarcoidosis (combined) |
Initial sample | 382 European ancestry Crohn__s disease cases, 398 European ancestry Sarcoidosis cases, 394 European ancestry controls |
Replication sample | 660 European ancestry Crohn__s disease cases, 657 European ancestry Sarcoidosis cases, 1,091 European ancestry controls |
Region | 10p12.2 |
Chromosome id | chr10 |
Chromosome position | 23376509 |
Reported gene | C10orf67 |
Mapped gene | LOC105376453 - MIR1254-2 |
Upstream gene id | 105376453 |
Downstream gene id | 100616217 |
SNP gene ids | |
Upstream gene distance | 17443 |
Downstream gene distance | 16896 |
SNP risk allele | rs1398024-A |
SNPs | rs1398024 |
Merged | 0 |
SNP id current | 1398024 |
Context | regulatory_region_variant |
Intergenic | 1 |
Allele frequency | 0.25 |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | |
Or beta | 1.23 |
%95 Ci | [1.04-1.45] |
Platform | Affymetrix [83360] |
CNV | N |
Mapped trait | Sarcoidosis, Crohn__s disease |
Mapped trait URI | http://www.orpha.net/ORDO/Orphanet_797, http://www.ebi.ac.uk/efo/EFO_0000384 |
Study accession | GCST000212 |