SNP Detail For rs1397427
1.Mapping Information
Human SNP ID rs1397427
Human chromosome chr4
Human SNP position 36005283
Pig chromosome chr8
Pig SNP position 29047711
2.Annotation Information
PubMed ID26379185
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26379185
StudyNo Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.
Disease/TraitMild influenza (H1N1) infection
Initial sample107 European ancestry mild cases, 549 European ancestry population controls
Replication sampleNA
Region4p14
Chromosome idchr4
Chromosome position36005283
Reported geneARAP2, PCDH7
Mapped geneLOC105374398 - LOC101928667
Upstream gene id105374398
Downstream gene id101928667
SNP gene ids
Upstream gene distance20017
Downstream gene distance1725
SNP risk allelers1397427-?
SNPsrs1397427
Merged
SNP id current1397427
Contextintron_variant
Intergenic1
Allele frequency0.06052
P value0.000000001
Pvalue mlog9
P value text
Or beta3.77
%95 Ci[3.32-4.22]
PlatformAffymetrix [547296]
CNVN
Mapped traitinfluenza A (H1N1)
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_1001488
Study accessionGCST003124
PubMed ID26379185
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26379185
StudyNo Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.
Disease/TraitInfluenza A (H1N1) infection
Initial sample49 European ancestry severe cases, 107 European ancestry mild cases, 549 European ancestry population controls
Replication sampleNA
Region4p14
Chromosome idchr4
Chromosome position36005283
Reported geneARAP2, PCDH7
Mapped geneLOC105374398 - LOC101928667
Upstream gene id105374398
Downstream gene id101928667
SNP gene ids
Upstream gene distance20017
Downstream gene distance1725
SNP risk allelers1397427-?
SNPsrs1397427
Merged
SNP id current1397427
Contextintron_variant
Intergenic1
Allele frequency0.06052
P value0.000000005
Pvalue mlog8.30102999566398
P value text
Or beta3.222
%95 Ci[2.138-4.856]
PlatformAffymetrix [547296]
CNVN
Mapped traitinfluenza A (H1N1)
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_1001488
Study accessionGCST003125