Human SNP ID | rs1397427 |
---|---|
Human chromosome | chr4 |
Human SNP position | 36005283 |
Pig chromosome | chr8 |
Pig SNP position | 29047711 |
PubMed ID | 26379185 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/26379185 |
Study | No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity. |
Disease/Trait | Mild influenza (H1N1) infection |
Initial sample | 107 European ancestry mild cases, 549 European ancestry population controls |
Replication sample | NA |
Region | 4p14 |
Chromosome id | chr4 |
Chromosome position | 36005283 |
Reported gene | ARAP2, PCDH7 |
Mapped gene | LOC105374398 - LOC101928667 |
Upstream gene id | 105374398 |
Downstream gene id | 101928667 |
SNP gene ids | |
Upstream gene distance | 20017 |
Downstream gene distance | 1725 |
SNP risk allele | rs1397427-? |
SNPs | rs1397427 |
Merged | |
SNP id current | 1397427 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.06052 |
P value | 0.000000001 |
Pvalue mlog | 9 |
P value text | |
Or beta | 3.77 |
%95 Ci | [3.32-4.22] |
Platform | Affymetrix [547296] |
CNV | N |
Mapped trait | influenza A (H1N1) |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_1001488 |
Study accession | GCST003124 |
PubMed ID | 26379185 |
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/26379185 |
Study | No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity. |
Disease/Trait | Influenza A (H1N1) infection |
Initial sample | 49 European ancestry severe cases, 107 European ancestry mild cases, 549 European ancestry population controls |
Replication sample | NA |
Region | 4p14 |
Chromosome id | chr4 |
Chromosome position | 36005283 |
Reported gene | ARAP2, PCDH7 |
Mapped gene | LOC105374398 - LOC101928667 |
Upstream gene id | 105374398 |
Downstream gene id | 101928667 |
SNP gene ids | |
Upstream gene distance | 20017 |
Downstream gene distance | 1725 |
SNP risk allele | rs1397427-? |
SNPs | rs1397427 |
Merged | |
SNP id current | 1397427 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.06052 |
P value | 0.000000005 |
Pvalue mlog | 8.30102999566398 |
P value text | |
Or beta | 3.222 |
%95 Ci | [2.138-4.856] |
Platform | Affymetrix [547296] |
CNV | N |
Mapped trait | influenza A (H1N1) |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_1001488 |
Study accession | GCST003125 |