SNP Detail For rs139545172
1.Mapping Information
Human SNP ID rs139545172
Human chromosome chrX
Human SNP position 19186106
Pig chromosome chrX
Pig SNP position 16797969
2.Annotation Information
PubMed ID26053186
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26053186
StudyMercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.
Disease/Trait3-hydroxypropylmercapturic acid levels in smokers
Initial sample362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals
Replication sampleNA
RegionXp22.13
Chromosome idchrX
Chromosome position19186106
Reported geneNR
Mapped geneADGRG2 - PDHA1
Upstream gene id10149
Downstream gene id5160
SNP gene ids
Upstream gene distance63175
Downstream gene distance157787
SNP risk allelers139545172-?
SNPsrs139545172
Merged
SNP id current139545172
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.0000003
Pvalue mlog6.52287874528033
P value text
Or beta0.3328
%95 Ci[NR] unit decrease
PlatformIllumina [up to 11892802] (imputed)
CNVN
Mapped traitsmoking behavior, 3-hydroxypropylmercapturic acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004318, http://www.ebi.ac.uk/efo/EFO_0007014
Study accessionGCST002956