Human SNP ID | rs139545172 |
---|---|
Human chromosome | chrX |
Human SNP position | 19186106 |
Pig chromosome | chrX |
Pig SNP position | 16797969 |
PubMed ID | 26053186 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/26053186 |
Study | Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer. |
Disease/Trait | 3-hydroxypropylmercapturic acid levels in smokers |
Initial sample | 362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals |
Replication sample | NA |
Region | Xp22.13 |
Chromosome id | chrX |
Chromosome position | 19186106 |
Reported gene | NR |
Mapped gene | ADGRG2 - PDHA1 |
Upstream gene id | 10149 |
Downstream gene id | 5160 |
SNP gene ids | |
Upstream gene distance | 63175 |
Downstream gene distance | 157787 |
SNP risk allele | rs139545172-? |
SNPs | rs139545172 |
Merged | |
SNP id current | 139545172 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.0000003 |
Pvalue mlog | 6.52287874528033 |
P value text | |
Or beta | 0.3328 |
%95 Ci | [NR] unit decrease |
Platform | Illumina [up to 11892802] (imputed) |
CNV | N |
Mapped trait | smoking behavior, 3-hydroxypropylmercapturic acid measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004318, http://www.ebi.ac.uk/efo/EFO_0007014 |
Study accession | GCST002956 |