SNP Detail For rs139528199
1.Mapping Information
Human SNP ID rs139528199
Human chromosome chr9
Human SNP position 30905407
Pig chromosome chr10
Pig SNP position 39905256
2.Annotation Information
PubMed ID26634245
JournalBMC Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26634245
StudyA genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.
Disease/TraitPost bronchodilator FEV1/FVC ratio
Initial sample10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals
Replication sampleNA
Region9p21.1
Chromosome idchr9
Chromosome position30905407
Reported geneIntergenic
Mapped geneRPS26P2 - FTLP4
Upstream gene id646753
Downstream gene id100129251
SNP gene ids
Upstream gene distance73158
Downstream gene distance29180
SNP risk allelers139528199-C
SNPsrs139528199
Merged0
SNP id current139528199
Contextintergenic_variant
Intergenic1
Allele frequency0.999
P value0.0000004
Pvalue mlog6.39794000867203
P value text(AA)
Or beta0.362
%95 Ciunit increase
PlatformIllumina [NR] (imputed)
CNVN
Mapped traitresponse to bronchodilator, FEV/FEC ratio
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0097366, http://www.ebi.ac.uk/efo/EFO_0004713
Study accessionGCST003264