SNP Detail For rs139509979
1.Mapping Information
Human SNP ID rs139509979
Human chromosome chr22
Human SNP position 33189162
Pig chromosome chr9
Pig SNP position 133562704
2.Annotation Information
PubMed ID26634245
JournalBMC Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26634245
StudyA genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.
Disease/TraitPost bronchodilator FEV1/FVC ratio
Initial sample10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals
Replication sampleNA
Region22q12.3
Chromosome idchr22
Chromosome position33189162
Reported geneIntergenic
Mapped geneLARGE
Upstream gene id
Downstream gene id
SNP gene ids9215
Upstream gene distance
Downstream gene distance
SNP risk allelers139509979-G
SNPsrs139509979
Merged0
SNP id current139509979
Contextintron_variant
Intergenic0
Allele frequency0.999
P value0.000005
Pvalue mlog5.30102999566398
P value text(AA)
Or beta0.41
%95 Ciunit increase
PlatformIllumina [NR] (imputed)
CNVN
Mapped traitresponse to bronchodilator, FEV/FEC ratio
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0097366, http://www.ebi.ac.uk/efo/EFO_0004713
Study accessionGCST003264