SNP Detail For rs1395
1.Mapping Information
Human SNP ID rs1395
Human chromosome chr2
Human SNP position 27201768
Pig chromosome chr3
Pig SNP position 118927085
2.Annotation Information
PubMed ID24816252
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24816252
StudyAn atlas of genetic influences on human blood metabolites.
Disease/TraitBlood metabolite levels
Initial sample7,824 European ancestry individuals
Replication sampleNA
Region2p23.3
Chromosome idchr2
Chromosome position27201768
Reported geneSLC5A6
Mapped geneSLC5A6
Upstream gene id
Downstream gene id
SNP gene ids8884
Upstream gene distance
Downstream gene distance
SNP risk allelers1395-A
SNPsrs1395
Merged0
SNP id current1395
Contextmissense_variant
Intergenic0
Allele frequency0.7
P value0.00000000008
Pvalue mlog10.096910013008
P value text(pantothenate)
Or beta0.017
%95 Ci[0.011-0.023] unit increase
PlatformAffymetrix, Illumina [2100000] (imputed)
CNVN
Mapped traitblood metabolite measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005664
Study accessionGCST002443