SNP Detail For rs1394397
1.Mapping Information
Human SNP ID rs1394397
Human chromosome chr1
Human SNP position 57190938
Pig chromosome chr6
Pig SNP position 142930640
2.Annotation Information
PubMed ID24324551
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/24324551
StudyGenome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.
Disease/TraitPR interval in Tripanosoma cruzi seropositivity
Initial sample580 Brazilian ancestry individuals
Replication sampleNA
Region1p32.2
Chromosome idchr1
Chromosome position57190938
Reported geneNR
Mapped geneDAB1
Upstream gene id
Downstream gene id
SNP gene ids1600
Upstream gene distance
Downstream gene distance
SNP risk allelers1394397-?
SNPsrs1394397
Merged0
SNP id current1394397
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta
%95 Ci
PlatformAffymetrix [5486770] (imputed)
CNVN
Mapped traitPR interval, Trypanosoma cruzi seropositivity
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004462, http://www.ebi.ac.uk/efo/EFO_0005530
Study accessionGCST002279