Human SNP ID | rs139427007 |
---|---|
Human chromosome | chr12 |
Human SNP position | 97202325 |
Pig chromosome | chr5 |
Pig SNP position | 90952407 |
PubMed ID | 26220383 |
---|---|
Journal | Epilepsy Res |
Link | www.ncbi.nlm.nih.gov/pubmed/26220383 |
Study | GWAS identifies two susceptibility loci for lamotrigine-induced skin rash in patients with epilepsy. |
Disease/Trait | Epilepsy and lamotrigine-induced maculopapular eruptions |
Initial sample | 34 Korean ancestry cases, 1,080 Korean ancestry healthy controls |
Replication sample | NA |
Region | 12q23.1 |
Chromosome id | chr12 |
Chromosome position | 97202325 |
Reported gene | XR_246024.1 |
Mapped gene | LOC105369927, LOC105369928 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105369927, 105369928 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs139427007-? |
SNPs | rs139427007 |
Merged | |
SNP id current | 139427007 |
Context | intergenic_variant |
Intergenic | 0 |
Allele frequency | 0.01 |
P value | 0.0000004 |
Pvalue mlog | 6.39794000867203 |
P value text | |
Or beta | 11 |
%95 Ci | [NR] |
Platform | Affymetrix [4893794] (imputed) |
CNV | N |
Mapped trait | response to lamotrigine, maculopapular eruption, epilepsy |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0007661, http://www.ebi.ac.uk/efo/EFO_1001253, http://www.ebi.ac.uk/efo/EFO_0000474 |
Study accession | GCST002949 |