SNP Detail For rs139427007
1.Mapping Information
Human SNP ID rs139427007
Human chromosome chr12
Human SNP position 97202325
Pig chromosome chr5
Pig SNP position 90952407
2.Annotation Information
PubMed ID26220383
JournalEpilepsy Res
Linkwww.ncbi.nlm.nih.gov/pubmed/26220383
StudyGWAS identifies two susceptibility loci for lamotrigine-induced skin rash in patients with epilepsy.
Disease/TraitEpilepsy and lamotrigine-induced maculopapular eruptions
Initial sample34 Korean ancestry cases, 1,080 Korean ancestry healthy controls
Replication sampleNA
Region12q23.1
Chromosome idchr12
Chromosome position97202325
Reported geneXR_246024.1
Mapped geneLOC105369927, LOC105369928
Upstream gene id
Downstream gene id
SNP gene ids105369927, 105369928
Upstream gene distance
Downstream gene distance
SNP risk allelers139427007-?
SNPsrs139427007
Merged
SNP id current139427007
Contextintergenic_variant
Intergenic0
Allele frequency0.01
P value0.0000004
Pvalue mlog6.39794000867203
P value text
Or beta11
%95 Ci[NR]
PlatformAffymetrix [4893794] (imputed)
CNVN
Mapped traitresponse to lamotrigine, maculopapular eruption, epilepsy
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0007661, http://www.ebi.ac.uk/efo/EFO_1001253, http://www.ebi.ac.uk/efo/EFO_0000474
Study accessionGCST002949