SNP Detail For rs139399000
1.Mapping Information
Human SNP ID rs139399000
Human chromosome chr19
Human SNP position 46701184
Pig chromosome chr6
Pig SNP position 47905940
2.Annotation Information
PubMed ID26634245
JournalBMC Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26634245
StudyA genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.
Disease/TraitPost bronchodilator FEV1
Initial sample10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals
Replication sampleNA
Region19q13.32
Chromosome idchr19
Chromosome position46701184
Reported genePRKD2
Mapped genePRKD2
Upstream gene id
Downstream gene id
SNP gene ids25865
Upstream gene distance
Downstream gene distance
SNP risk allelers139399000-G
SNPsrs139399000
Merged0
SNP id current139399000
Contextintron_variant
Intergenic0
Allele frequency0.977
P value0.000001
Pvalue mlog6
P value text(AA)
Or beta0.329
%95 CiNR unit increase
PlatformIllumina [NR] (imputed)
CNVN
Mapped traitforced expiratory volume, response to bronchodilator
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004314, http://purl.obolibrary.org/obo/GO_0097366
Study accessionGCST003262