SNP Detail For rs1392502
1.Mapping Information
Human SNP ID rs1392502
Human chromosome chr16
Human SNP position 59753666
Pig chromosome chr6
Pig SNP position 19448245
2.Annotation Information
PubMed ID26053186
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26053186
StudyMercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.
Disease/Trait3-hydroxy-1-methylpropylmercapturic acid levels in smokers
Initial sample361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals
Replication sampleNA
Region16q21
Chromosome idchr16
Chromosome position59753666
Reported geneNR
Mapped geneLOC105371298 - APOOP5
Upstream gene id105371298
Downstream gene id644649
SNP gene ids
Upstream gene distance289897
Downstream gene distance466
SNP risk allelers1392502-?
SNPsrs1392502
Merged
SNP id current1392502
Contextintron_variant
Intergenic1
Allele frequencyNR
P value0.00000001
Pvalue mlog8
P value text(AA)
Or beta0.8419
%95 Ci[NR] unit increase
PlatformIllumina [up to 11892802] (imputed)
CNVN
Mapped traitsmoking behavior, 3-hydroxy-1-methylpropylmercapturic acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004318, http://www.ebi.ac.uk/efo/EFO_0007015
Study accessionGCST002957