SNP Detail For rs139134142
1.Mapping Information
Human SNP ID rs139134142
Human chromosome chr14
Human SNP position 91603145
Pig chromosome chr2
Pig SNP position 100745603
2.Annotation Information
PubMed ID26634245
JournalBMC Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26634245
StudyA genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.
Disease/TraitPost bronchodilator FEV1 in COPD
Initial sample5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases
Replication sampleNA
Region14q32.12
Chromosome idchr14
Chromosome position91603145
Reported geneCATSPERB
Mapped genePOLR3GP1, CATSPERB
Upstream gene id
Downstream gene id
SNP gene ids100422395, 79820
Upstream gene distance
Downstream gene distance
SNP risk allelers139134142-A
SNPsrs139134142
Merged0
SNP id current139134142
Contextintron_variant
Intergenic0
Allele frequency0.985
P value0.000005
Pvalue mlog5.30102999566398
P value text(AA)
Or beta0.49
%95 CiNR unit decrease
PlatformIllumina [NR] (imputed)
CNVN
Mapped traitforced expiratory volume, response to bronchodilator, chronic obstructive pulmonary disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004314, http://purl.obolibrary.org/obo/GO_0097366, http://www.ebi.ac.uk/efo/EFO_0000341
Study accessionGCST003263