Human SNP ID | rs138880 |
---|---|
Human chromosome | chr22 |
Human SNP position | 49824963 |
Pig chromosome | chr5 |
Pig SNP position | 111003138 |
PubMed ID | 23894747 |
---|---|
Journal | JAMA Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/23894747 |
Study | A comprehensive family-based replication study of schizophrenia genes. |
Disease/Trait | Schizophrenia |
Initial sample | 11,185 European ancestry cases, 10,768 European ancestry controls |
Replication sample | 1,262 African American ancestry individuals, 2,740 European ancestry individuals, 2,296 Asian ancestry individuals |
Region | 22q13.33 |
Chromosome id | chr22 |
Chromosome position | 49824963 |
Reported gene | BRD1 |
Mapped gene | BRD1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 23774 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs138880-C |
SNPs | rs138880 |
Merged | 0 |
SNP id current | 138880 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.78 |
P value | 0.0000002 |
Pvalue mlog | 6.69897000433601 |
P value text | |
Or beta | 1.1 |
%95 Ci | [NR] |
Platform | NR [1085772] (imputed) |
CNV | N |
Mapped trait | schizophrenia |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000692 |
Study accession | GCST001851 |