SNP Detail For rs138880
1.Mapping Information
Human SNP ID rs138880
Human chromosome chr22
Human SNP position 49824963
Pig chromosome chr5
Pig SNP position 111003138
2.Annotation Information
PubMed ID23894747
JournalJAMA Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/23894747
StudyA comprehensive family-based replication study of schizophrenia genes.
Disease/TraitSchizophrenia
Initial sample11,185 European ancestry cases, 10,768 European ancestry controls
Replication sample1,262 African American ancestry individuals, 2,740 European ancestry individuals, 2,296 Asian ancestry individuals
Region22q13.33
Chromosome idchr22
Chromosome position49824963
Reported geneBRD1
Mapped geneBRD1
Upstream gene id
Downstream gene id
SNP gene ids23774
Upstream gene distance
Downstream gene distance
SNP risk allelers138880-C
SNPsrs138880
Merged0
SNP id current138880
Contextintron_variant
Intergenic0
Allele frequency0.78
P value0.0000002
Pvalue mlog6.69897000433601
P value text
Or beta1.1
%95 Ci[NR]
PlatformNR [1085772] (imputed)
CNVN
Mapped traitschizophrenia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692
Study accessionGCST001851