SNP Detail For rs138799235
1.Mapping Information
Human SNP ID rs138799235
Human chromosome chr9
Human SNP position 109367495
Pig chromosome chr1
Pig SNP position 280901744
2.Annotation Information
PubMed ID26569114
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26569114
StudyGenome-Wide Association Study of Staphylococcus aureus Carriage in a Community-Based Sample of Mexican-Americans in Starr County, Texas.
Disease/TraitStaphylococcus aureus nasal carriage (persistent)
Initial sample141 Mexican American persistent carrier individuals, 620 Mexican American non-carrier individuals
Replication sampleNA
Region9q31.3
Chromosome idchr9
Chromosome position109367495
Reported geneEPB41L4B, PTPN3
Mapped geneEPB41L4B - PTPN3
Upstream gene id54566
Downstream gene id5774
SNP gene ids
Upstream gene distance46531
Downstream gene distance8199
SNP risk allelers138799235-C
SNPsrs138799235
Merged
SNP id current138799235
Contextintergenic_variant
Intergenic1
Allele frequency0.09
P value0.0000008
Pvalue mlog6.09691001300805
P value text
Or beta3
%95 Ci[1.94鈥?.63]
PlatformAffymetrix, Illumina [at least 603042] (imputed)
CNVN
Mapped trait
Mapped trait URI
Study accessionGCST003182