Human SNP ID | rs138799235 |
---|---|
Human chromosome | chr9 |
Human SNP position | 109367495 |
Pig chromosome | chr1 |
Pig SNP position | 280901744 |
PubMed ID | 26569114 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/26569114 |
Study | Genome-Wide Association Study of Staphylococcus aureus Carriage in a Community-Based Sample of Mexican-Americans in Starr County, Texas. |
Disease/Trait | Staphylococcus aureus nasal carriage (persistent) |
Initial sample | 141 Mexican American persistent carrier individuals, 620 Mexican American non-carrier individuals |
Replication sample | NA |
Region | 9q31.3 |
Chromosome id | chr9 |
Chromosome position | 109367495 |
Reported gene | EPB41L4B, PTPN3 |
Mapped gene | EPB41L4B - PTPN3 |
Upstream gene id | 54566 |
Downstream gene id | 5774 |
SNP gene ids | |
Upstream gene distance | 46531 |
Downstream gene distance | 8199 |
SNP risk allele | rs138799235-C |
SNPs | rs138799235 |
Merged | |
SNP id current | 138799235 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.09 |
P value | 0.0000008 |
Pvalue mlog | 6.09691001300805 |
P value text | |
Or beta | 3 |
%95 Ci | [1.94鈥?.63] |
Platform | Affymetrix, Illumina [at least 603042] (imputed) |
CNV | N |
Mapped trait | |
Mapped trait URI | |
Study accession | GCST003182 |