Human SNP ID | rs1387389 |
---|---|
Human chromosome | chr1 |
Human SNP position | 164720525 |
Pig chromosome | chr4 |
Pig SNP position | 93708286 |
PubMed ID | 23319801 |
---|---|
Journal | Cancer Res |
Link | www.ncbi.nlm.nih.gov/pubmed/23319801 |
Study | Identification of inherited genetic variations influencing prognosis in early-onset breast cancer. |
Disease/Trait | Breast cancer (prognosis) |
Initial sample | 536 European ancestry early-onset cases |
Replication sample | 1,516 European ancestry early-onset cases |
Region | 1q23.3 |
Chromosome id | chr1 |
Chromosome position | 164720525 |
Reported gene | PBX1 |
Mapped gene | PBX1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 5087 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1387389-? |
SNPs | rs1387389 |
Merged | 0 |
SNP id current | 1387389 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.36 |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | |
Or beta | 1.28 |
%95 Ci | [1.16-1.43] |
Platform | Illumina [487496] |
CNV | N |
Mapped trait | breast carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000305 |
Study accession | GCST001816 |