SNP Detail For rs1387389
1.Mapping Information
Human SNP ID rs1387389
Human chromosome chr1
Human SNP position 164720525
Pig chromosome chr4
Pig SNP position 93708286
2.Annotation Information
PubMed ID23319801
JournalCancer Res
Linkwww.ncbi.nlm.nih.gov/pubmed/23319801
StudyIdentification of inherited genetic variations influencing prognosis in early-onset breast cancer.
Disease/TraitBreast cancer (prognosis)
Initial sample536 European ancestry early-onset cases
Replication sample1,516 European ancestry early-onset cases
Region1q23.3
Chromosome idchr1
Chromosome position164720525
Reported genePBX1
Mapped genePBX1
Upstream gene id
Downstream gene id
SNP gene ids5087
Upstream gene distance
Downstream gene distance
SNP risk allelers1387389-?
SNPsrs1387389
Merged0
SNP id current1387389
Contextintron_variant
Intergenic0
Allele frequency0.36
P value0.000004
Pvalue mlog5.39794000867203
P value text
Or beta1.28
%95 Ci[1.16-1.43]
PlatformIllumina [487496]
CNVN
Mapped traitbreast carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000305
Study accessionGCST001816