SNP Detail For rs1386809
1.Mapping Information
Human SNP ID rs1386809
Human chromosome chr12
Human SNP position 55031132
Pig chromosome chr5
Pig SNP position 20920847
2.Annotation Information
PubMed ID23382691
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23382691
StudyLoci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.
Disease/TraitIgG glycosylation
Initial sample2,247 European ancestry individuals
Replication sampleNA
Region12q13.2
Chromosome idchr12
Chromosome position55031132
Reported geneNR
Mapped geneLOC101927484
Upstream gene id
Downstream gene id
SNP gene ids101927484
Upstream gene distance
Downstream gene distance
SNP risk allelers1386809-C
SNPsrs1386809
Merged0
SNP id current1386809
Contextdownstream_gene_variant
Intergenic0
Allele frequency0.284827378378378
P value0.000007
Pvalue mlog5.15490195998574
P value text(IGP20)
Or beta0.1576
%95 Ci[0.089-0.226] unit increase
PlatformIllumina [~ 2500000] (imputed)
CNVN
Mapped traitserum IgG glycosylation measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005193
Study accessionGCST001848