SNP Detail For rs1385351
1.Mapping Information
Human SNP ID rs1385351
Human chromosome chr2
Human SNP position 192469177
Pig chromosome chr15
Pig SNP position 108636924
2.Annotation Information
PubMed ID20041166
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20041166
StudyCommon genetic variation and the control of HIV-1 in humans.
Disease/TraitHIV-1 control
Initial sample2,362 European ancestry cases
Replication sampleNA
Region2q32.3
Chromosome idchr2
Chromosome position192469177
Reported geneintergenic
Mapped geneLOC105373814 - PCGEM1
Upstream gene id105373814
Downstream gene id64002
SNP gene ids
Upstream gene distance96225
Downstream gene distance280668
SNP risk allelers1385351-?
SNPsrs1385351
Merged0
SNP id current1385351
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.000004
Pvalue mlog5.39794000867203
P value text(progression)
Or beta
%95 Ci
PlatformIllumina [NR]
CNVN
Mapped traitHIV-1 infection
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000180
Study accessionGCST000549