Human SNP ID | rs1385351 |
---|---|
Human chromosome | chr2 |
Human SNP position | 192469177 |
Pig chromosome | chr15 |
Pig SNP position | 108636924 |
PubMed ID | 20041166 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20041166 |
Study | Common genetic variation and the control of HIV-1 in humans. |
Disease/Trait | HIV-1 control |
Initial sample | 2,362 European ancestry cases |
Replication sample | NA |
Region | 2q32.3 |
Chromosome id | chr2 |
Chromosome position | 192469177 |
Reported gene | intergenic |
Mapped gene | LOC105373814 - PCGEM1 |
Upstream gene id | 105373814 |
Downstream gene id | 64002 |
SNP gene ids | |
Upstream gene distance | 96225 |
Downstream gene distance | 280668 |
SNP risk allele | rs1385351-? |
SNPs | rs1385351 |
Merged | 0 |
SNP id current | 1385351 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | (progression) |
Or beta | |
%95 Ci | |
Platform | Illumina [NR] |
CNV | N |
Mapped trait | HIV-1 infection |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000180 |
Study accession | GCST000549 |