Human SNP ID | rs138387343 |
---|---|
Human chromosome | chr17 |
Human SNP position | 58983272 |
Pig chromosome | chr12 |
Pig SNP position | 36479551 |
PubMed ID | 26634245 |
---|---|
Journal | BMC Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26634245 |
Study | A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry. |
Disease/Trait | Post bronchodilator FEV1/FVC ratio |
Initial sample | 10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals |
Replication sample | NA |
Region | 17q22 |
Chromosome id | chr17 |
Chromosome position | 58983272 |
Reported gene | PPM1E |
Mapped gene | PPM1E, TRIM37 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 22843, 4591 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs138387343-C |
SNPs | rs138387343 |
Merged | 0 |
SNP id current | 138387343 |
Context | 3_prime_UTR_variant |
Intergenic | 0 |
Allele frequency | 0.997 |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | (AA) |
Or beta | 0.232 |
%95 Ci | unit increase |
Platform | Illumina [NR] (imputed) |
CNV | N |
Mapped trait | response to bronchodilator, FEV/FEC ratio |
Mapped trait URI | http://purl.obolibrary.org/obo/GO_0097366, http://www.ebi.ac.uk/efo/EFO_0004713 |
Study accession | GCST003264 |