SNP Detail For rs138387343
1.Mapping Information
Human SNP ID rs138387343
Human chromosome chr17
Human SNP position 58983272
Pig chromosome chr12
Pig SNP position 36479551
2.Annotation Information
PubMed ID26634245
JournalBMC Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26634245
StudyA genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.
Disease/TraitPost bronchodilator FEV1/FVC ratio
Initial sample10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals
Replication sampleNA
Region17q22
Chromosome idchr17
Chromosome position58983272
Reported genePPM1E
Mapped genePPM1E, TRIM37
Upstream gene id
Downstream gene id
SNP gene ids22843, 4591
Upstream gene distance
Downstream gene distance
SNP risk allelers138387343-C
SNPsrs138387343
Merged0
SNP id current138387343
Context3_prime_UTR_variant
Intergenic0
Allele frequency0.997
P value0.000001
Pvalue mlog6
P value text(AA)
Or beta0.232
%95 Ciunit increase
PlatformIllumina [NR] (imputed)
CNVN
Mapped traitresponse to bronchodilator, FEV/FEC ratio
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0097366, http://www.ebi.ac.uk/efo/EFO_0004713
Study accessionGCST003264