SNP Detail For rs138325416
1.Mapping Information
Human SNP ID rs138325416
Human chromosome chr6
Human SNP position 24006333
Pig chromosome chr7
Pig SNP position 19957555
2.Annotation Information
PubMed ID26634245
JournalBMC Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26634245
StudyA genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.
Disease/TraitPost bronchodilator FEV1 in COPD
Initial sample5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases
Replication sampleNA
Region6p22.3
Chromosome idchr6
Chromosome position24006333
Reported geneIntergenic
Mapped geneHNRNPA1P58 - NRSN1
Upstream gene id100289286
Downstream gene id140767
SNP gene ids
Upstream gene distance3707
Downstream gene distance119853
SNP risk allelers138325416-C
SNPsrs138325416
Merged0
SNP id current138325416
Contextdownstream_gene_variant
Intergenic1
Allele frequency0.998
P value0.0000006
Pvalue mlog6.22184874961635
P value text(AA)
Or beta4.31
%95 CiNR unit increase
PlatformIllumina [NR] (imputed)
CNVN
Mapped traitforced expiratory volume, response to bronchodilator, chronic obstructive pulmonary disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004314, http://purl.obolibrary.org/obo/GO_0097366, http://www.ebi.ac.uk/efo/EFO_0000341
Study accessionGCST003263