Human SNP ID | rs138325416 |
---|---|
Human chromosome | chr6 |
Human SNP position | 24006333 |
Pig chromosome | chr7 |
Pig SNP position | 19957555 |
PubMed ID | 26634245 |
---|---|
Journal | BMC Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26634245 |
Study | A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry. |
Disease/Trait | Post bronchodilator FEV1 in COPD |
Initial sample | 5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases |
Replication sample | NA |
Region | 6p22.3 |
Chromosome id | chr6 |
Chromosome position | 24006333 |
Reported gene | Intergenic |
Mapped gene | HNRNPA1P58 - NRSN1 |
Upstream gene id | 100289286 |
Downstream gene id | 140767 |
SNP gene ids | |
Upstream gene distance | 3707 |
Downstream gene distance | 119853 |
SNP risk allele | rs138325416-C |
SNPs | rs138325416 |
Merged | 0 |
SNP id current | 138325416 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.998 |
P value | 0.0000006 |
Pvalue mlog | 6.22184874961635 |
P value text | (AA) |
Or beta | 4.31 |
%95 Ci | NR unit increase |
Platform | Illumina [NR] (imputed) |
CNV | N |
Mapped trait | forced expiratory volume, response to bronchodilator, chronic obstructive pulmonary disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004314, http://purl.obolibrary.org/obo/GO_0097366, http://www.ebi.ac.uk/efo/EFO_0000341 |
Study accession | GCST003263 |