SNP Detail For rs137948999
1.Mapping Information
Human SNP ID rs137948999
Human chromosome chrX
Human SNP position 18194062
Pig chromosome chrX
Pig SNP position 15824257
2.Annotation Information
PubMed ID26053186
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26053186
StudyMercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.
Disease/Trait3-hydroxy-1-methylpropylmercapturic acid levels in smokers
Initial sample361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals
Replication sampleNA
RegionXp22.13
Chromosome idchrX
Chromosome position18194062
Reported geneNR
Mapped geneBEND2
Upstream gene id
Downstream gene id
SNP gene ids139105
Upstream gene distance
Downstream gene distance
SNP risk allelers137948999-?
SNPsrs137948999
Merged
SNP id current137948999
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000004
Pvalue mlog5.39794000867203
P value text(Native Hawaiian)
Or beta0.8279
%95 Ci[NR] unit decrease
PlatformIllumina [up to 11892802] (imputed)
CNVN
Mapped traitsmoking behavior, 3-hydroxy-1-methylpropylmercapturic acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004318, http://www.ebi.ac.uk/efo/EFO_0007015
Study accessionGCST002957