SNP Detail For rs1378559
1.Mapping Information
Human SNP ID rs1378559
Human chromosome chrX
Human SNP position 21362148
Pig chromosome chrX
Pig SNP position 18884745
2.Annotation Information
PubMed ID25056061
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/25056061
StudyBiological insights from 108 schizophrenia-associated genetic loci.
Disease/TraitSchizophrenia
Initial sample32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls
Replication sample1,513 European ancestry cases, 66,236 European ancestry controls
RegionXp22.12
Chromosome idchrX
Chromosome position21362148
Reported geneCNKSR2
Mapped geneLOC105373146
Upstream gene id
Downstream gene id
SNP gene ids105373146
Upstream gene distance
Downstream gene distance
SNP risk allelers1378559-T
SNPsrs1378559
Merged0
SNP id current1378559
Contextintron_variant
Intergenic0
Allele frequency0.831
P value0.000000000002
Pvalue mlog11.698970004336
P value text
Or beta1.09
%95 Ci[1.064-1.116]
PlatformAffymetrix, Illumina [9005918] (imputed)
CNVN
Mapped traitschizophrenia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692
Study accessionGCST002539