Human SNP ID | rs1378559 |
---|---|
Human chromosome | chrX |
Human SNP position | 21362148 |
Pig chromosome | chrX |
Pig SNP position | 18884745 |
PubMed ID | 25056061 |
---|---|
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/25056061 |
Study | Biological insights from 108 schizophrenia-associated genetic loci. |
Disease/Trait | Schizophrenia |
Initial sample | 32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls |
Replication sample | 1,513 European ancestry cases, 66,236 European ancestry controls |
Region | Xp22.12 |
Chromosome id | chrX |
Chromosome position | 21362148 |
Reported gene | CNKSR2 |
Mapped gene | LOC105373146 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105373146 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1378559-T |
SNPs | rs1378559 |
Merged | 0 |
SNP id current | 1378559 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.831 |
P value | 0.000000000002 |
Pvalue mlog | 11.698970004336 |
P value text | |
Or beta | 1.09 |
%95 Ci | [1.064-1.116] |
Platform | Affymetrix, Illumina [9005918] (imputed) |
CNV | N |
Mapped trait | schizophrenia |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000692 |
Study accession | GCST002539 |