SNP Detail For rs1373692
1.Mapping Information
Human SNP ID rs1373692
Human chromosome chr5
Human SNP position 40431081
Pig chromosome chr16
Pig SNP position 26736241
2.Annotation Information
PubMed ID17447842
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/17447842
StudyNovel Crohn disease locus identified by genome-wide association maps to a gene desert on 5p13.1 and modulates expression of PTGER4.
Disease/TraitCrohn__s disease
Initial sample547 European ancestry cases, 928 European ancestry controls
Replication sample1,266 European ancestry cases, 559 European ancestry controls, Up to 428 European ancestry trios
Region5p13.1
Chromosome idchr5
Chromosome position40431081
Reported geneintergenic
Mapped geneLOC105374736 - LOC105374737
Upstream gene id105374736
Downstream gene id105374737
SNP gene ids
Upstream gene distance84526
Downstream gene distance168799
SNP risk allelers1373692-?
SNPsrs1373692
Merged0
SNP id current1373692
Contextnon_coding_transcript_exon_variant
Intergenic1
Allele frequency0.59
P value0.000000000002
Pvalue mlog11.698970004336
P value text
Or beta1.46
%95 Ci[NR]
PlatformIllumina [302451]
CNVN
Mapped traitCrohn__s disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000384
Study accessionGCST000014