Human SNP ID | rs1373692 |
---|---|
Human chromosome | chr5 |
Human SNP position | 40431081 |
Pig chromosome | chr16 |
Pig SNP position | 26736241 |
PubMed ID | 17447842 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/17447842 |
Study | Novel Crohn disease locus identified by genome-wide association maps to a gene desert on 5p13.1 and modulates expression of PTGER4. |
Disease/Trait | Crohn__s disease |
Initial sample | 547 European ancestry cases, 928 European ancestry controls |
Replication sample | 1,266 European ancestry cases, 559 European ancestry controls, Up to 428 European ancestry trios |
Region | 5p13.1 |
Chromosome id | chr5 |
Chromosome position | 40431081 |
Reported gene | intergenic |
Mapped gene | LOC105374736 - LOC105374737 |
Upstream gene id | 105374736 |
Downstream gene id | 105374737 |
SNP gene ids | |
Upstream gene distance | 84526 |
Downstream gene distance | 168799 |
SNP risk allele | rs1373692-? |
SNPs | rs1373692 |
Merged | 0 |
SNP id current | 1373692 |
Context | non_coding_transcript_exon_variant |
Intergenic | 1 |
Allele frequency | 0.59 |
P value | 0.000000000002 |
Pvalue mlog | 11.698970004336 |
P value text | |
Or beta | 1.46 |
%95 Ci | [NR] |
Platform | Illumina [302451] |
CNV | N |
Mapped trait | Crohn__s disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000384 |
Study accession | GCST000014 |