SNP Detail For rs1373453
1.Mapping Information
Human SNP ID rs1373453
Human chromosome chr12
Human SNP position 69661130
Pig chromosome chr5
Pig SNP position 36521286
2.Annotation Information
PubMed ID22863734
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22863734
StudyGenome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.
Disease/TraitOrofacial clefts
Initial sampleUp to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls
Replication sampleup to 795 East Asian ancestry trios
Region12q15
Chromosome idchr12
Chromosome position69661130
Reported geneNR
Mapped geneBEST3
Upstream gene id
Downstream gene id
SNP gene ids144453
Upstream gene distance
Downstream gene distance
SNP risk allelers1373453-?
SNPsrs1373453
Merged0
SNP id current1373453
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequencyNR
P value0.000002
Pvalue mlog5.69897000433601
P value text(Meta-All, NSCL/P)
Or beta
%95 Ci
PlatformNR [497084]
CNVN
Mapped traitprogranulin measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004625
Study accessionGCST001628