Human SNP ID | rs1372791 |
---|---|
Human chromosome | chr13 |
Human SNP position | 106132916 |
Pig chromosome | chr11 |
Pig SNP position | 81184385 |
PubMed ID | 22610502 |
---|---|
Journal | Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22610502 |
Study | Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients. |
Disease/Trait | Immune reponse to smallpox (secreted IL-2) |
Initial sample | Up to 512 European ancestry individuals, up to 199 African American individuals |
Replication sample | NA |
Region | 13q33.2 |
Chromosome id | chr13 |
Chromosome position | 106132916 |
Reported gene | LOC341604 |
Mapped gene | LINC00343 - LINC00460 |
Upstream gene id | 144920 |
Downstream gene id | 728192 |
SNP gene ids | |
Upstream gene distance | 371120 |
Downstream gene distance | 243647 |
SNP risk allele | rs1372791-A |
SNPs | rs1372791 |
Merged | 0 |
SNP id current | 1372791 |
Context | regulatory_region_variant |
Intergenic | 1 |
Allele frequency | |
P value | 0.0000004 |
Pvalue mlog | 6.39794000867203 |
P value text | (EA) |
Or beta | |
%95 Ci | |
Platform | Illumina [NR] |
CNV | N |
Mapped trait | response to vaccine, cytokine measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004645, http://www.ebi.ac.uk/efo/EFO_0004873 |
Study accession | GCST001535 |