SNP Detail For rs1372791
1.Mapping Information
Human SNP ID rs1372791
Human chromosome chr13
Human SNP position 106132916
Pig chromosome chr11
Pig SNP position 81184385
2.Annotation Information
PubMed ID22610502
JournalHum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22610502
StudyGenome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.
Disease/TraitImmune reponse to smallpox (secreted IL-2)
Initial sampleUp to 512 European ancestry individuals, up to 199 African American individuals
Replication sampleNA
Region13q33.2
Chromosome idchr13
Chromosome position106132916
Reported geneLOC341604
Mapped geneLINC00343 - LINC00460
Upstream gene id144920
Downstream gene id728192
SNP gene ids
Upstream gene distance371120
Downstream gene distance243647
SNP risk allelers1372791-A
SNPsrs1372791
Merged0
SNP id current1372791
Contextregulatory_region_variant
Intergenic1
Allele frequency
P value0.0000004
Pvalue mlog6.39794000867203
P value text(EA)
Or beta
%95 Ci
PlatformIllumina [NR]
CNVN
Mapped traitresponse to vaccine, cytokine measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004645, http://www.ebi.ac.uk/efo/EFO_0004873
Study accessionGCST001535