Human SNP ID | rs13708 |
---|---|
Human chromosome | chr16 |
Human SNP position | 30989488 |
Pig chromosome | chr3 |
Pig SNP position | 17844847 |
PubMed ID | 25903422 |
---|---|
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/25903422 |
Study | Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility. |
Disease/Trait | Psoriasis |
Initial sample | 3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls |
Replication sample | 5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls |
Region | 16p11.2 |
Chromosome id | chr16 |
Chromosome position | 30989488 |
Reported gene | FBXL19 |
Mapped gene | STX1B |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 112755 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs13708-G |
SNPs | rs13708 |
Merged | 0 |
SNP id current | 13708 |
Context | 3_prime_UTR_variant |
Intergenic | 0 |
Allele frequency | 0.35822 |
P value | 0.00000002 |
Pvalue mlog | 7.69897000433601 |
P value text | |
Or beta | 1.19 |
%95 Ci | [1.12-1.26] |
Platform | Illumina [up to 4778154] (imputed) |
CNV | N |
Mapped trait | psoriasis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000676 |
Study accession | GCST002874 |
PubMed ID | 25903422 |
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/25903422 |
Study | Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility. |
Disease/Trait | Psoriasis |
Initial sample | 3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls |
Replication sample | 5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls |
Region | 16p11.2 |
Chromosome id | chr16 |
Chromosome position | 30989488 |
Reported gene | FBXL19 |
Mapped gene | STX1B |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 112755 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs13708-G |
SNPs | rs13708 |
Merged | 0 |
SNP id current | 13708 |
Context | 3_prime_UTR_variant |
Intergenic | 0 |
Allele frequency | 0.079839 |
P value | 0.0000008 |
Pvalue mlog | 6.09691001300805 |
P value text | (Chinese) |
Or beta | 1.55 |
%95 Ci | [1.3-1.85] |
Platform | Illumina [up to 4778154] (imputed) |
CNV | N |
Mapped trait | psoriasis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000676 |
Study accession | GCST002874 |