SNP Detail For rs13708
1.Mapping Information
Human SNP ID rs13708
Human chromosome chr16
Human SNP position 30989488
Pig chromosome chr3
Pig SNP position 17844847
2.Annotation Information
PubMed ID25903422
JournalNat Commun
Linkwww.ncbi.nlm.nih.gov/pubmed/25903422
StudyGenome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.
Disease/TraitPsoriasis
Initial sample3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls
Replication sample5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls
Region16p11.2
Chromosome idchr16
Chromosome position30989488
Reported geneFBXL19
Mapped geneSTX1B
Upstream gene id
Downstream gene id
SNP gene ids112755
Upstream gene distance
Downstream gene distance
SNP risk allelers13708-G
SNPsrs13708
Merged0
SNP id current13708
Context3_prime_UTR_variant
Intergenic0
Allele frequency0.35822
P value0.00000002
Pvalue mlog7.69897000433601
P value text
Or beta1.19
%95 Ci[1.12-1.26]
PlatformIllumina [up to 4778154] (imputed)
CNVN
Mapped traitpsoriasis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000676
Study accessionGCST002874
PubMed ID25903422
JournalNat Commun
Linkwww.ncbi.nlm.nih.gov/pubmed/25903422
StudyGenome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.
Disease/TraitPsoriasis
Initial sample3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls
Replication sample5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls
Region16p11.2
Chromosome idchr16
Chromosome position30989488
Reported geneFBXL19
Mapped geneSTX1B
Upstream gene id
Downstream gene id
SNP gene ids112755
Upstream gene distance
Downstream gene distance
SNP risk allelers13708-G
SNPsrs13708
Merged0
SNP id current13708
Context3_prime_UTR_variant
Intergenic0
Allele frequency0.079839
P value0.0000008
Pvalue mlog6.09691001300805
P value text(Chinese)
Or beta1.55
%95 Ci[1.3-1.85]
PlatformIllumina [up to 4778154] (imputed)
CNVN
Mapped traitpsoriasis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000676
Study accessionGCST002874