Human SNP ID | rs1362756 |
---|---|
Human chromosome | chr16 |
Human SNP position | 51424379 |
Pig chromosome | chr6 |
Pig SNP position | 29998901 |
PubMed ID | 20548946 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20548946 |
Study | A genome-wide association study of optic disc parameters. |
Disease/Trait | Optic disc parameters |
Initial sample | 7,360 European ancestry individuals |
Replication sample | 4,455 European ancestry individuals |
Region | 16q12.1 |
Chromosome id | chr16 |
Chromosome position | 51424379 |
Reported gene | SALL1 |
Mapped gene | LOC102723323 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 102723323 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1362756-C |
SNPs | rs1362756 |
Merged | 0 |
SNP id current | 1362756 |
Context | intergenic_variant |
Intergenic | 0 |
Allele frequency | 0.28 |
P value | 0.000000005 |
Pvalue mlog | 8.30102999566398 |
P value text | |
Or beta | 0.03 |
%95 Ci | [0.02-0.04] mm increase |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | optic disc size measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004832 |
Study accession | GCST000699 |
PubMed ID | 25631615 |
Journal | Genet Epidemiol |
Link | www.ncbi.nlm.nih.gov/pubmed/25631615 |
Study | Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology. |
Disease/Trait | Optic disc area |
Initial sample | 15,117 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals |
Replication sample | 2,405 Chinese ancestry individuals, 2,305 Malay ancestry individuals, 2,131 Indian ancestry individuals |
Region | 16q12.1 |
Chromosome id | chr16 |
Chromosome position | 51424379 |
Reported gene | SALL1 |
Mapped gene | LOC102723323 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 102723323 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1362756-C |
SNPs | rs1362756 |
Merged | 0 |
SNP id current | 1362756 |
Context | intergenic_variant |
Intergenic | 0 |
Allele frequency | 0.29 |
P value | 0.00000000009 |
Pvalue mlog | 10.0457574905606 |
P value text | |
Or beta | 0.033 |
%95 Ci | [0.023-0.043] unit increase |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | optic disc area measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006937 |
Study accession | GCST002765 |
PubMed ID | 25631615 |
Journal | Genet Epidemiol |
Link | www.ncbi.nlm.nih.gov/pubmed/25631615 |
Study | Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology. |
Disease/Trait | Optic disc area |
Initial sample | 15,117 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals |
Replication sample | 2,405 Chinese ancestry individuals, 2,305 Malay ancestry individuals, 2,131 Indian ancestry individuals |
Region | 16q12.1 |
Chromosome id | chr16 |
Chromosome position | 51424379 |
Reported gene | SALL1 |
Mapped gene | LOC102723323 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 102723323 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1362756-C |
SNPs | rs1362756 |
Merged | 0 |
SNP id current | 1362756 |
Context | intergenic_variant |
Intergenic | 0 |
Allele frequency | 0.29 |
P value | 0.00000000002 |
Pvalue mlog | 10.698970004336 |
P value text | (EA) |
Or beta | 0.037 |
%95 Ci | [0.025-0.049] unit increase |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | optic disc area measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006937 |
Study accession | GCST002765 |