SNP Detail For rs1360573
1.Mapping Information
Human SNP ID rs1360573
Human chromosome chr10
Human SNP position 36596993
Pig chromosome chr10
Pig SNP position 64548854
2.Annotation Information
PubMed ID22699663
JournalJ Dent Res
Linkwww.ncbi.nlm.nih.gov/pubmed/22699663
StudyGenome-wide association study of periodontal pathogen colonization.
Disease/TraitPeriodontal microbiota
Initial sample1,020 European ancestry individuals
Replication sampleNA
Region10p11.21
Chromosome idchr10
Chromosome position36596993
Reported geneFZD8, ANKRD30A
Mapped geneNAMPTP1 - LOC105376496
Upstream gene id646309
Downstream gene id105376496
SNP gene ids
Upstream gene distance72757
Downstream gene distance320283
SNP risk allelers1360573-A
SNPsrs1360573
Merged0
SNP id current1360573
Contextintergenic_variant
Intergenic1
Allele frequency0.752
P value0.000002
Pvalue mlog5.69897000433601
P value text(P. gingi)
Or beta2.75
%95 Ci[1.78-4.26]
PlatformAffymetrix [~ 2500000] (imputed)
CNVN
Mapped traitperiodontitis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000649
Study accessionGCST001588