Human SNP ID | rs1360573 |
---|---|
Human chromosome | chr10 |
Human SNP position | 36596993 |
Pig chromosome | chr10 |
Pig SNP position | 64548854 |
PubMed ID | 22699663 |
---|---|
Journal | J Dent Res |
Link | www.ncbi.nlm.nih.gov/pubmed/22699663 |
Study | Genome-wide association study of periodontal pathogen colonization. |
Disease/Trait | Periodontal microbiota |
Initial sample | 1,020 European ancestry individuals |
Replication sample | NA |
Region | 10p11.21 |
Chromosome id | chr10 |
Chromosome position | 36596993 |
Reported gene | FZD8, ANKRD30A |
Mapped gene | NAMPTP1 - LOC105376496 |
Upstream gene id | 646309 |
Downstream gene id | 105376496 |
SNP gene ids | |
Upstream gene distance | 72757 |
Downstream gene distance | 320283 |
SNP risk allele | rs1360573-A |
SNPs | rs1360573 |
Merged | 0 |
SNP id current | 1360573 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.752 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | (P. gingi) |
Or beta | 2.75 |
%95 Ci | [1.78-4.26] |
Platform | Affymetrix [~ 2500000] (imputed) |
CNV | N |
Mapped trait | periodontitis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000649 |
Study accession | GCST001588 |