SNP Detail For rs1355223
1.Mapping Information
Human SNP ID rs1355223
Human chromosome chr11
Human SNP position 34742932
Pig chromosome chr2
Pig SNP position 28611880
2.Annotation Information
PubMed ID23740937
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23740937
StudyA systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci.
Disease/TraitSystemic lupus erythematosus and Systemic sclerosis
Initial sampleup to 2,761 European ancestry systemic sclerosis cases, 769 European ancestry systemic lupus erythematosus cases, 7,381 European ancestry controls
Replication sampleup to 1,578 European ancestry systemic sclerosis cases, 1,727 European ancestry systemic lupus erythematosus cases, 6,893 European ancestry controls
Region11p13
Chromosome idchr11
Chromosome position34742932
Reported geneEHF
Mapped geneLOC102723568
Upstream gene id
Downstream gene id
SNP gene ids102723568
Upstream gene distance
Downstream gene distance
SNP risk allelers1355223-?
SNPsrs1355223
Merged0
SNP id current1355223
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequency
P value0.000004
Pvalue mlog5.39794000867203
P value text(lcSSc)
Or beta1.12
%95 Ci[NR]
PlatformIllumina [NR]
CNVN
Mapped traitsystemic lupus erythematosus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0002690
Study accessionGCST002069