SNP Detail For rs13542
1.Mapping Information
Human SNP ID rs13542
Human chromosome chr13
Human SNP position 99986138
Pig chromosome chr11
Pig SNP position 76107356
2.Annotation Information
PubMed ID22863734
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22863734
StudyGenome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.
Disease/TraitOrofacial clefts
Initial sampleUp to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls
Replication sampleup to 795 East Asian ancestry trios
Region13q32.3
Chromosome idchr13
Chromosome position99986138
Reported geneNR
Mapped geneZIC2
Upstream gene id
Downstream gene id
SNP gene ids7546
Upstream gene distance
Downstream gene distance
SNP risk allelers13542-?
SNPsrs13542
Merged0
SNP id current13542
Context3_prime_UTR_variant
Intergenic0
Allele frequencyNR
P value0.000001
Pvalue mlog6
P value text(Meta-All, NSCL/P)
Or beta
%95 Ci
PlatformNR [497084]
CNVN
Mapped traitprogranulin measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004625
Study accessionGCST001628