Human SNP ID | rs1353899 |
---|---|
Human chromosome | chr3 |
Human SNP position | 177511191 |
Pig chromosome | chr13 |
Pig SNP position | 124777341 |
PubMed ID | 23743675 |
---|---|
Journal | Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23743675 |
Study | A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks. |
Disease/Trait | Alcohol consumption |
Initial sample | 2,322 European ancestry individuals from 118 families, 2,593 European ancestry individuals |
Replication sample | |
Region | 3q26.32 |
Chromosome id | chr3 |
Chromosome position | 177511191 |
Reported gene | intergenic |
Mapped gene | LINC00578 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 100505566 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1353899-? |
SNPs | rs1353899 |
Merged | 0 |
SNP id current | 1353899 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.22 |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | |
Or beta | 0.09 |
%95 Ci | [0.051-0.129] unit decrease |
Platform | Illumina [4058415] (imputed) |
CNV | N |
Mapped trait | alcohol drinking |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004329 |
Study accession | GCST002065 |