SNP Detail For rs1353899
1.Mapping Information
Human SNP ID rs1353899
Human chromosome chr3
Human SNP position 177511191
Pig chromosome chr13
Pig SNP position 124777341
2.Annotation Information
PubMed ID23743675
JournalHum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23743675
StudyA meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.
Disease/TraitAlcohol consumption
Initial sample2,322 European ancestry individuals from 118 families, 2,593 European ancestry individuals
Replication sample
Region3q26.32
Chromosome idchr3
Chromosome position177511191
Reported geneintergenic
Mapped geneLINC00578
Upstream gene id
Downstream gene id
SNP gene ids100505566
Upstream gene distance
Downstream gene distance
SNP risk allelers1353899-?
SNPsrs1353899
Merged0
SNP id current1353899
Contextintron_variant
Intergenic0
Allele frequency0.22
P value0.000004
Pvalue mlog5.39794000867203
P value text
Or beta0.09
%95 Ci[0.051-0.129] unit decrease
PlatformIllumina [4058415] (imputed)
CNVN
Mapped traitalcohol drinking
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004329
Study accessionGCST002065