SNP Detail For rs1353747
1.Mapping Information
Human SNP ID rs1353747
Human chromosome chr5
Human SNP position 59041654
Pig chromosome chr16
Pig SNP position 40706816
2.Annotation Information
PubMed ID23535729
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23535729
StudyLarge-scale genotyping identifies 41 new loci associated with breast cancer risk.
Disease/TraitBreast cancer
Initial sample10,052 European ancestry cases, 12,575 European ancestry controls
Replication sample45,290 European ancestry cases, 41,880 European ancestry controls
Region5q11.2
Chromosome idchr5
Chromosome position59041654
Reported genePDE4D
Mapped genePDE4D, LOC105378990
Upstream gene id
Downstream gene id
SNP gene ids5144, 105378990
Upstream gene distance
Downstream gene distance
SNP risk allelers1353747-T
SNPsrs1353747
Merged0
SNP id current1353747
Contextintron_variant
Intergenic0
Allele frequency0.905
P value0.00000003
Pvalue mlog7.52287874528033
P value text
Or beta1.09
%95 Ci[1.05-1.12]
PlatformAffymetrix, Illumina [~ 2600000] (imputed)
CNVN
Mapped traitbreast carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000305
Study accessionGCST001937