Human SNP ID | rs1353747 |
---|---|
Human chromosome | chr5 |
Human SNP position | 59041654 |
Pig chromosome | chr16 |
Pig SNP position | 40706816 |
PubMed ID | 23535729 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23535729 |
Study | Large-scale genotyping identifies 41 new loci associated with breast cancer risk. |
Disease/Trait | Breast cancer |
Initial sample | 10,052 European ancestry cases, 12,575 European ancestry controls |
Replication sample | 45,290 European ancestry cases, 41,880 European ancestry controls |
Region | 5q11.2 |
Chromosome id | chr5 |
Chromosome position | 59041654 |
Reported gene | PDE4D |
Mapped gene | PDE4D, LOC105378990 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 5144, 105378990 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1353747-T |
SNPs | rs1353747 |
Merged | 0 |
SNP id current | 1353747 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.905 |
P value | 0.00000003 |
Pvalue mlog | 7.52287874528033 |
P value text | |
Or beta | 1.09 |
%95 Ci | [1.05-1.12] |
Platform | Affymetrix, Illumina [~ 2600000] (imputed) |
CNV | N |
Mapped trait | breast carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000305 |
Study accession | GCST001937 |