SNP Detail For rs134871
1.Mapping Information
Human SNP ID rs134871
Human chromosome chr22
Human SNP position 42256710
Pig chromosome chr5
Pig SNP position 4064197
2.Annotation Information
PubMed ID25673413
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/25673413
StudyGenetic studies of body mass index yield new insights for obesity biology.
Disease/TraitBody mass index
Initial sampleup to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals
Replication sampleup to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828
Region22q13.2
Chromosome idchr22
Chromosome position42256710
Reported geneLOC388906
Mapped geneTCF20
Upstream gene id
Downstream gene id
SNP gene ids6942
Upstream gene distance
Downstream gene distance
SNP risk allelers134871-C
SNPsrs134871
Merged0
SNP id current134871
Contextintron_variant
Intergenic0
Allele frequency0.497
P value0.000007
Pvalue mlog5.15490195998574
P value text
Or beta0.013
%95 Ci[0.0075-0.0189] kg/m2 increase
PlatformAffymetrix, Illumina [2550021]
CNVN
Mapped traitbody mass index
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004340
Study accessionGCST002783