Human SNP ID | rs1345467 |
---|---|
Human chromosome | chr16 |
Human SNP position | 51448410 |
Pig chromosome | chr6 |
Pig SNP position | 29975677 |
PubMed ID | 25241763 |
---|---|
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/25241763 |
Study | Meta-analysis of genome-wide association studies identifies novel loci that influence cupping and the glaucomatous process. |
Disease/Trait | Vertical cup-disc ratio |
Initial sample | 18,963 European ancestry individuals, 2,131 Erasmus Rucphen individuals |
Replication sample | 2,453 Chinese ancestry individuals, 2,026 Indian ancestry individuals, 2,305 Malay ancestry individuals |
Region | 16q12.1 |
Chromosome id | chr16 |
Chromosome position | 51448410 |
Reported gene | SALL1 |
Mapped gene | LOC102723323 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 102723323 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1345467-G |
SNPs | rs1345467 |
Merged | 0 |
SNP id current | 1345467 |
Context | intergenic_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.0000000000004 |
Pvalue mlog | 12.397940008672 |
P value text | |
Or beta | 0.01 |
%95 Ci | [0.0080-0.0120] unit increase |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | optic disc size measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004832 |
Study accession | GCST002626 |