Human SNP ID | rs1344555 |
---|---|
Human chromosome | chr3 |
Human SNP position | 169582431 |
Pig chromosome | chr13 |
Pig SNP position | 117015835 |
PubMed ID | 21946350 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21946350 |
Study | Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function. |
Disease/Trait | Pulmonary function |
Initial sample | 48,201 European ancestry individuals |
Replication sample | 46,411 European ancestry individuals |
Region | 3q26.2 |
Chromosome id | chr3 |
Chromosome position | 169582431 |
Reported gene | MECOM |
Mapped gene | MECOM |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 2122 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1344555-T |
SNPs | rs1344555 |
Merged | 0 |
SNP id current | 1344555 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.21 |
P value | 0.00000003 |
Pvalue mlog | 7.52287874528033 |
P value text | (FEV1) |
Or beta | 0.034 |
%95 Ci | [0.022-0.046] unit decrease |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | pulmonary function measurement, forced expiratory volume |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003892, http://www.ebi.ac.uk/efo/EFO_0004314 |
Study accession | GCST001251 |
PubMed ID | 23284291 |
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23284291 |
Study | Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function. |
Disease/Trait | Pulmonary function (interaction) |
Initial sample | 50,047 European ancestry individuals |
Replication sample | NA |
Region | 3q26.2 |
Chromosome id | chr3 |
Chromosome position | 169582431 |
Reported gene | MECOM |
Mapped gene | MECOM |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 2122 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1344555-? |
SNPs | rs1344555 |
Merged | 0 |
SNP id current | 1344555 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | (FEV1, Pack-years) |
Or beta | |
%95 Ci | |
Platform | NR [~ 2500000] (imputed) |
CNV | N |
Mapped trait | forced expiratory volume |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004314 |
Study accession | GCST001784 |