SNP Detail For rs1343151
1.Mapping Information
Human SNP ID rs1343151
Human chromosome chr1
Human SNP position 67253446
Pig chromosome chr6
Pig SNP position 134226769
2.Annotation Information
PubMed ID17804789
JournalProc Natl Acad Sci U S A
Linkwww.ncbi.nlm.nih.gov/pubmed/17804789
StudyGenome-wide association study for Crohn__s disease in the Quebec Founder Population identifies multiple validated disease loci.
Disease/TraitCrohn__s disease
Initial sample382 French Canadian founder trios
Replication sample750 European ancestry cases, 828 European ancestry controls, 521 European ancestry trios
Region1p31.3
Chromosome idchr1;1;1;1;1;1;1;1;1;1;1;1;1;1;1;1
Chromosome position67264945;67240275;67253446;67264372;67256884;67135449;67262335;67124778;67236843;67259437;67228519;67204530;67260421;67205233;67187327;67219915
Reported geneIL23R
Mapped geneIL23R - LOC100130497; IL23R; IL23R; IL23R - LOC100130497; IL23R; C1orf141; IL23R - LOC100130497; C1orf141; IL23R; IL23R; IL23R; IL23R; IL23R - RNU4ATAC4P; IL23R; IL23R; IL23R
Upstream gene id
Downstream gene id
SNP gene ids
Upstream gene distance
Downstream gene distance
SNP risk allelers10789230-?; rs11209026-?; rs1343151-?; rs6669582-?; rs10889676-?; rs11209003-?; rs12567232-?; rs11209002-?; rs11465804-?; rs10889677-?; rs2201841-?; rs1004819-?; rs9988642-?; rs2902440-?; rs2064689-?; rs11465802-?
SNPsrs10789230; rs11209026; rs1343151; rs6669582; rs10889676; rs11209003; rs12567232; rs11209002; rs11465804; rs10889677; rs2201841; rs1004819; rs9988642; rs2902440; rs2064689; rs11465802
Merged0
SNP id current
Contextdownstream_gene_variant; missense_variant; intron_variant; downstream_gene_variant; intron_variant; intron_variant; downstream_gene_variant; intron_variant; intron_variant; 3_prime_UTR_variant; intron_variant; intron_variant; downstream_gene_variant; intr
Intergenic
Allele frequency0.23
P value0.00000001
Pvalue mlog8
P value text
Or beta1.38
%95 Ci[1.23-1.53]
PlatformPerlegen [164279]
CNVN
Mapped traitCrohn__s disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000384
Study accessionGCST000071
PubMed ID17804789
JournalProc Natl Acad Sci U S A
Linkwww.ncbi.nlm.nih.gov/pubmed/17804789
StudyGenome-wide association study for Crohn__s disease in the Quebec Founder Population identifies multiple validated disease loci.
Disease/TraitCrohn__s disease
Initial sample382 French Canadian founder trios
Replication sample750 European ancestry cases, 828 European ancestry controls, 521 European ancestry trios
Region1p31.3
Chromosome idchr1;1;1;1;1;1;1;1;1;1;1;1;1;1;1;1
Chromosome position67264945;67240275;67253446;67264372;67256884;67135449;67262335;67124778;67236843;67259437;67228519;67204530;67260421;67205233;67187327;67219915
Reported geneIL23R
Mapped geneIL23R - LOC100130497; IL23R; IL23R; IL23R - LOC100130497; IL23R; C1orf141; IL23R - LOC100130497; C1orf141; IL23R; IL23R; IL23R; IL23R; IL23R - RNU4ATAC4P; IL23R; IL23R; IL23R
Upstream gene id
Downstream gene id
SNP gene ids
Upstream gene distance
Downstream gene distance
SNP risk allelers10789230-?; rs11209026-?; rs1343151-?; rs6669582-?; rs10889676-?; rs11209003-?; rs12567232-?; rs11209002-?; rs11465804-?; rs10889677-?; rs2201841-?; rs1004819-?; rs9988642-?; rs2902440-?; rs2064689-?; rs11465802-?
SNPsrs10789230; rs11209026; rs1343151; rs6669582; rs10889676; rs11209003; rs12567232; rs11209002; rs11465804; rs10889677; rs2201841; rs1004819; rs9988642; rs2902440; rs2064689; rs11465802
Merged0
SNP id current
Contextdownstream_gene_variant; missense_variant; intron_variant; downstream_gene_variant; intron_variant; intron_variant; downstream_gene_variant; intron_variant; intron_variant; 3_prime_UTR_variant; intron_variant; intron_variant; downstream_gene_variant; intr
Intergenic
Allele frequency0.97
P value0.0000002
Pvalue mlog6.69897000433601
P value text
Or beta2.56
%95 Ci[1.75-3.70]
PlatformPerlegen [164279]
CNVN
Mapped traitCrohn__s disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000384
Study accessionGCST000071