Human SNP ID | rs13429458 |
---|---|
Human chromosome | chr2 |
Human SNP position | 43411699 |
Pig chromosome | chr3 |
Pig SNP position | 103042332 |
PubMed ID | 21151128 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21151128 |
Study | Genome-wide association study identifies susceptibility loci for polycystic ovary syndrome on chromosome 2p16.3, 2p21 and 9q33.3. |
Disease/Trait | Polycystic ovary syndrome |
Initial sample | 744 Han Chinese ancestry cases, 895 Han Chinese ancestry controls |
Replication sample | 3,338 Han Chinese ancestry cases, 5,792 Han Chinese ancestry controls |
Region | 2p21 |
Chromosome id | chr2 |
Chromosome position | 43411699 |
Reported gene | ZFP36L2, LOC100129726, THADA |
Mapped gene | THADA |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 63892 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs13429458-A |
SNPs | rs13429458 |
Merged | 0 |
SNP id current | 13429458 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.91 |
P value | 2E-23 |
Pvalue mlog | 22.698970004336 |
P value text | |
Or beta | 1.49 |
%95 Ci | [1.39-1.61] |
Platform | Affymetrix [611633] |
CNV | N |
Mapped trait | polycystic ovary syndrome |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000660 |
Study accession | GCST000914 |
PubMed ID | 22885925 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22885925 |
Study | Genome-wide association study identifies eight new risk loci for polycystic ovary syndrome. |
Disease/Trait | Polycystic ovary syndrome |
Initial sample | 2,254 Han Chinese ancestry cases, 3,001 Han Chinese ancestry controls |
Replication sample | 8,226 Han Chinese ancestry cases, 7,578 Han Chinese ancestry controls |
Region | 2p21 |
Chromosome id | chr2 |
Chromosome position | 43411699 |
Reported gene | NR |
Mapped gene | THADA |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 63892 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs13429458-A |
SNPs | rs13429458 |
Merged | 0 |
SNP id current | 13429458 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.0000000000004 |
Pvalue mlog | 12.397940008672 |
P value text | |
Or beta | 1.49 |
%95 Ci | [NR] |
Platform | Affymetrix [NR] (imputed) |
CNV | N |
Mapped trait | polycystic ovary syndrome |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000660 |
Study accession | GCST001634 |
PubMed ID | 22952603 |
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/22952603 |
Study | Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13). |
Disease/Trait | Response to amphetamines |
Initial sample | 1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals |
Replication sample | NA |
Region | 2p21 |
Chromosome id | chr2 |
Chromosome position | 43411699 |
Reported gene | THADA |
Mapped gene | THADA |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 63892 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs13429458-? |
SNPs | rs13429458 |
Merged | 0 |
SNP id current | 13429458 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000006 |
Pvalue mlog | 5.22184874961635 |
P value text | (SF4) |
Or beta | |
%95 Ci | |
Platform | Affymetrix [5476100] (imputed) |
CNV | N |
Mapped trait | response to drug |
Mapped trait URI | http://purl.obolibrary.org/obo/GO_0042493 |
Study accession | GCST001651 |