Human SNP ID | rs13421350 |
---|---|
Human chromosome | chr2 |
Human SNP position | 172453843 |
Pig chromosome | chr15 |
Pig SNP position | 87857530 |
PubMed ID | 26305897 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26305897 |
Study | Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND). |
Disease/Trait | Diabetic kidney disease |
Initial sample | 1,564 African American cases, 369 African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry dia |
Replication sample | 950 African American cases, 50 African American diabetic controls, 1,887 African American non-diabetic controls, 471 American Indian ancestry cases, 340 American Indian ancestry diabetic controls, 486 American Indian ancestry non-diabetic controls, 582 Eu |
Region | 2q31.1 |
Chromosome id | chr2 |
Chromosome position | 172453843 |
Reported gene | ITGA6 |
Mapped gene | ITGA6 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 3655 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs13421350-? |
SNPs | rs13421350 |
Merged | |
SNP id current | 13421350 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.85 |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | (American Indian, additive ) |
Or beta | 1.5873016 |
%95 Ci | |
Platform | Affymetrix [NR] |
CNV | N |
Mapped trait | diabetic nephropathy |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000401 |
Study accession | GCST003098 |