SNP Detail For rs13421350
1.Mapping Information
Human SNP ID rs13421350
Human chromosome chr2
Human SNP position 172453843
Pig chromosome chr15
Pig SNP position 87857530
2.Annotation Information
PubMed ID26305897
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26305897
StudyGenome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).
Disease/TraitDiabetic kidney disease
Initial sample1,564 African American cases, 369 African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry dia
Replication sample950 African American cases, 50 African American diabetic controls, 1,887 African American non-diabetic controls, 471 American Indian ancestry cases, 340 American Indian ancestry diabetic controls, 486 American Indian ancestry non-diabetic controls, 582 Eu
Region2q31.1
Chromosome idchr2
Chromosome position172453843
Reported geneITGA6
Mapped geneITGA6
Upstream gene id
Downstream gene id
SNP gene ids3655
Upstream gene distance
Downstream gene distance
SNP risk allelers13421350-?
SNPsrs13421350
Merged
SNP id current13421350
Contextintron_variant
Intergenic0
Allele frequency0.85
P value0.000003
Pvalue mlog5.52287874528033
P value text(American Indian, additive )
Or beta1.5873016
%95 Ci
PlatformAffymetrix [NR]
CNVN
Mapped traitdiabetic nephropathy
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000401
Study accessionGCST003098