SNP Detail For rs1341239
1.Mapping Information
Human SNP ID rs1341239
Human chromosome chr6
Human SNP position 22303975
Pig chromosome chr7
Pig SNP position 18432543
2.Annotation Information
PubMed ID21623375
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21623375
StudyGenome-wide association identifies three new susceptibility loci for Paget__s disease of bone.
Disease/TraitPaget__s disease
Initial sample741 European ancestry cases, 2,699 European ancestry controls
Replication sample1,474 European ancestry cases, 1,671 European ancestry controls
Region6p22.3
Chromosome idchr6
Chromosome position22303975
Reported genePRL
Mapped genePRL - LOC105374971
Upstream gene id5617
Downstream gene id105374971
SNP gene ids
Upstream gene distance1092
Downstream gene distance45251
SNP risk allelers1341239-T
SNPsrs1341239
Merged0
SNP id current1341239
Contextintron_variant
Intergenic1
Allele frequency0.38
P value0.000004
Pvalue mlog5.39794000867203
P value text
Or beta1.2
%95 Ci[NR]
PlatformIllumina [2487078] (imputed)
CNVN
Mapped traitosteitis deformans
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004261
Study accessionGCST001086