Human SNP ID | rs1341239 |
---|---|
Human chromosome | chr6 |
Human SNP position | 22303975 |
Pig chromosome | chr7 |
Pig SNP position | 18432543 |
PubMed ID | 21623375 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21623375 |
Study | Genome-wide association identifies three new susceptibility loci for Paget__s disease of bone. |
Disease/Trait | Paget__s disease |
Initial sample | 741 European ancestry cases, 2,699 European ancestry controls |
Replication sample | 1,474 European ancestry cases, 1,671 European ancestry controls |
Region | 6p22.3 |
Chromosome id | chr6 |
Chromosome position | 22303975 |
Reported gene | PRL |
Mapped gene | PRL - LOC105374971 |
Upstream gene id | 5617 |
Downstream gene id | 105374971 |
SNP gene ids | |
Upstream gene distance | 1092 |
Downstream gene distance | 45251 |
SNP risk allele | rs1341239-T |
SNPs | rs1341239 |
Merged | 0 |
SNP id current | 1341239 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.38 |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | |
Or beta | 1.2 |
%95 Ci | [NR] |
Platform | Illumina [2487078] (imputed) |
CNV | N |
Mapped trait | osteitis deformans |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004261 |
Study accession | GCST001086 |