SNP Detail For rs1340490
1.Mapping Information
Human SNP ID rs1340490
Human chromosome chr13
Human SNP position 63490455
Pig chromosome chr11
Pig SNP position 38397583
2.Annotation Information
PubMed ID21844884
JournalPharmacogenomics J
Linkwww.ncbi.nlm.nih.gov/pubmed/21844884
StudyGenome-wide meta-analysis identifies variants associated with platinating agent susceptibility across populations
Disease/TraitResponse to platinum-based chemotherapy (cisplatin)
Initial sample176 Sub-Saharan African ancestry lymphoblastoid cell lines, 83 African ancestry lymphoblastoid cell lines, 175 East Asian ancestry lymphoblastoid cell lines, 174 European ancestry lymphoblastoid cell lines
Replication sampleNA
Region13q21.31
Chromosome idchr13
Chromosome position63490455
Reported geneintergenic
Mapped geneLINC00376 - LOC105370237
Upstream gene id104355293
Downstream gene id105370237
SNP gene ids
Upstream gene distance162361
Downstream gene distance95008
SNP risk allelers1340490-?
SNPsrs1340490
Merged0
SNP id current1340490
Contextintergenic_variant
Intergenic1
Allele frequency
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta
%95 Ci
PlatformNR [~ 3000000] (imputed)
CNVN
Mapped traitresponse to cisplatin
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0072718
Study accessionGCST001201