Human SNP ID | rs13403289 |
---|---|
Human chromosome | chr2 |
Human SNP position | 179352004 |
Pig chromosome | chr15 |
Pig SNP position | 94514467 |
PubMed ID | 23509613 |
---|---|
Journal | Autoimmune Dis |
Link | www.ncbi.nlm.nih.gov/pubmed/23509613 |
Study | Genome-wide association study of antiphospholipid antibodies. |
Disease/Trait | Presence of antiphospholipid antibodies |
Initial sample | 183 European ancestry ACL-positive cases, 487 European ancestry ACL-negative controls, 127 European ancestry LAC-positive cases, 581 European ancestry LAC-negative controls, 136 European ancestry Anti-B2GPI-positive cases, 360 European ancestry Anti-B2GPI |
Replication sample | NA |
Region | 2q31.2 |
Chromosome id | chr2 |
Chromosome position | 179352004 |
Reported gene | SESTD1 |
Mapped gene | SESTD1 - LOC644776 |
Upstream gene id | 91404 |
Downstream gene id | 644776 |
SNP gene ids | |
Upstream gene distance | 87381 |
Downstream gene distance | 48337 |
SNP risk allele | rs13403289-? |
SNPs | rs13403289 |
Merged | 0 |
SNP id current | 13403289 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.3857 |
P value | 0.000006 |
Pvalue mlog | 5.22184874961635 |
P value text | (ACL, LAC, or anti-B2 GPI) |
Or beta | 2.423 |
%95 Ci | [NR] |
Platform | Affymetrix [906600] |
CNV | N |
Mapped trait | antiphospholipid antibody measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005200 |
Study accession | GCST001872 |