SNP Detail For rs13403289
1.Mapping Information
Human SNP ID rs13403289
Human chromosome chr2
Human SNP position 179352004
Pig chromosome chr15
Pig SNP position 94514467
2.Annotation Information
PubMed ID23509613
JournalAutoimmune Dis
Linkwww.ncbi.nlm.nih.gov/pubmed/23509613
StudyGenome-wide association study of antiphospholipid antibodies.
Disease/TraitPresence of antiphospholipid antibodies
Initial sample183 European ancestry ACL-positive cases, 487 European ancestry ACL-negative controls, 127 European ancestry LAC-positive cases, 581 European ancestry LAC-negative controls, 136 European ancestry Anti-B2GPI-positive cases, 360 European ancestry Anti-B2GPI
Replication sampleNA
Region2q31.2
Chromosome idchr2
Chromosome position179352004
Reported geneSESTD1
Mapped geneSESTD1 - LOC644776
Upstream gene id91404
Downstream gene id644776
SNP gene ids
Upstream gene distance87381
Downstream gene distance48337
SNP risk allelers13403289-?
SNPsrs13403289
Merged0
SNP id current13403289
Contextintergenic_variant
Intergenic1
Allele frequency0.3857
P value0.000006
Pvalue mlog5.22184874961635
P value text(ACL, LAC, or anti-B2 GPI)
Or beta2.423
%95 Ci[NR]
PlatformAffymetrix [906600]
CNVN
Mapped traitantiphospholipid antibody measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005200
Study accessionGCST001872