SNP Detail For rs13403276
1.Mapping Information
Human SNP ID rs13403276
Human chromosome chr2
Human SNP position 218216574
Pig chromosome chr15
Pig SNP position 133356402
2.Annotation Information
PubMed ID23251661
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/23251661
StudyNovel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
Disease/TraitObesity-related traits
Initial sample815 Hispanic children from 263 families
Replication sampleNA
Region2q35
Chromosome idchr2
Chromosome position218216574
Reported geneARPC2
Mapped geneLOC101928487
Upstream gene id
Downstream gene id
SNP gene ids101928487
Upstream gene distance
Downstream gene distance
SNP risk allelers13403276-G
SNPsrs13403276
Merged0
SNP id current13403276
Contextupstream_gene_variant
Intergenic0
Allele frequency0.027
P value0.000007
Pvalue mlog5.15490195998574
P value text(Diet carbohydrate )
Or beta0.03
%95 Ci[NR] g/d increase
PlatformIllumina [899892]
CNVN
Mapped traitenergy intake
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003939
Study accessionGCST001762
PubMed ID23251661
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/23251661
StudyNovel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
Disease/TraitObesity-related traits
Initial sample815 Hispanic children from 263 families
Replication sampleNA
Region2q35
Chromosome idchr2
Chromosome position218216574
Reported geneARPC2
Mapped geneLOC101928487
Upstream gene id
Downstream gene id
SNP gene ids101928487
Upstream gene distance
Downstream gene distance
SNP risk allelers13403276-G
SNPsrs13403276
Merged0
SNP id current13403276
Contextupstream_gene_variant
Intergenic0
Allele frequency0.027
P value0.000003
Pvalue mlog5.52287874528033
P value text(Energy intake )
Or beta0.03
%95 Ci[NR] kcal/d increase
PlatformIllumina [899892]
CNVN
Mapped traitenergy intake
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003939
Study accessionGCST001762