SNP Detail For rs1340319
1.Mapping Information
Human SNP ID rs1340319
Human chromosome chr13
Human SNP position 64376290
Pig chromosome chr11
Pig SNP position 39405175
2.Annotation Information
PubMed ID21156761
JournalAnn Rheum Dis
Linkwww.ncbi.nlm.nih.gov/pubmed/21156761
StudyA genome-wide association study suggests contrasting associations in ACPA-positive versus ACPA-negative rheumatoid arthritis.
Disease/TraitRheumatoid arthritis
Initial sample1,147 European ancestry ACPA positive RA cases, 774 European ancestry ACPA negative RA cases, 1,079 European ancestry controls
Replication sample887 European ancestry ACPA positive RA cases, 1,218 European ancestry controls
Region13q21.31
Chromosome idchr13
Chromosome position64376290
Reported geneNR
Mapped geneLOC105377815 - LOC105370238
Upstream gene id105377815
Downstream gene id105370238
SNP gene ids
Upstream gene distance517111
Downstream gene distance60371
SNP risk allelers1340319-?
SNPsrs1340319
Merged0
SNP id current1340319
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.0000003
Pvalue mlog6.52287874528033
P value text(ACPA-positive RA vs controls)
Or beta
%95 Ci
PlatformIllumina [1723056] (imputed)
CNVN
Mapped traitrheumatoid arthritis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000685
Study accessionGCST000917