SNP Detail For rs13398206
1.Mapping Information
Human SNP ID rs13398206
Human chromosome chr2
Human SNP position 198304372
Pig chromosome chr15
Pig SNP position 113141630
2.Annotation Information
PubMed ID22219177
JournalCarcinogenesis
Linkwww.ncbi.nlm.nih.gov/pubmed/22219177
StudyA genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.
Disease/TraitProstate cancer (gene x gene interaction)
Initial sample4,723 European ancestry cases, 4,792 European ancestry controls
Replication sampleNA
Region2q33.1 x 11q13.3
Chromosome idchr2 x 11
Chromosome position198304372 x 69227200
Reported genePLCL1 x MYEOV
Mapped geneLOC101927619 x LOC105369366 - LOC105369367
Upstream gene id
Downstream gene id
SNP gene ids
Upstream gene distance
Downstream gene distance
SNP risk allelers13398206-? x rs10896449-?
SNPsrs13398206 x rs10896449
Merged0
SNP id current
Contextintron_variant x intergenic_variant
Intergenic
Allele frequencyNR
P value0.000004
Pvalue mlog5.39794000867203
P value text
Or beta1.24
%95 Ci[1.13-1.36]
PlatformAffymetrix, Illumina [1117531] (imputed)
CNVN
Mapped traitprostate carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001663
Study accessionGCST001370