Human SNP ID | rs13398206 |
---|---|
Human chromosome | chr2 |
Human SNP position | 198304372 |
Pig chromosome | chr15 |
Pig SNP position | 113141630 |
PubMed ID | 22219177 |
---|---|
Journal | Carcinogenesis |
Link | www.ncbi.nlm.nih.gov/pubmed/22219177 |
Study | A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants. |
Disease/Trait | Prostate cancer (gene x gene interaction) |
Initial sample | 4,723 European ancestry cases, 4,792 European ancestry controls |
Replication sample | NA |
Region | 2q33.1 x 11q13.3 |
Chromosome id | chr2 x 11 |
Chromosome position | 198304372 x 69227200 |
Reported gene | PLCL1 x MYEOV |
Mapped gene | LOC101927619 x LOC105369366 - LOC105369367 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs13398206-? x rs10896449-? |
SNPs | rs13398206 x rs10896449 |
Merged | 0 |
SNP id current | |
Context | intron_variant x intergenic_variant |
Intergenic | |
Allele frequency | NR |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | |
Or beta | 1.24 |
%95 Ci | [1.13-1.36] |
Platform | Affymetrix, Illumina [1117531] (imputed) |
CNV | N |
Mapped trait | prostate carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001663 |
Study accession | GCST001370 |