SNP Detail For rs133980
1.Mapping Information
Human SNP ID rs133980
Human chromosome chr22
Human SNP position 27626764
Pig chromosome chr14
Pig SNP position 47776449
2.Annotation Information
PubMed ID25189868
JournalAm J Hypertens
Linkwww.ncbi.nlm.nih.gov/pubmed/25189868
StudyGene-Smoking Interactions Identify Several Novel Blood Pressure Loci in the Framingham Heart Study.
Disease/TraitBlood pressure (smoking interaction)
Initial sampleUp to 6,889 individuals
Replication sampleNA
Region22q12.1
Chromosome idchr22
Chromosome position27626764
Reported geneMN1
Mapped geneLOC105372981 - MN1
Upstream gene id105372981
Downstream gene id4330
SNP gene ids
Upstream gene distance65279
Downstream gene distance121513
SNP risk allelers133980-?
SNPsrs133980
Merged0
SNP id current133980
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.00000002
Pvalue mlog7.69897000433601
P value text(SBP,CPD)
Or beta
%95 Ci
PlatformAffymetrix [2485435] (imputed)
CNVN
Mapped traitsystolic blood pressure, cigarettes per day measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006335, http://www.ebi.ac.uk/efo/EFO_0006525
Study accessionGCST002587
PubMed ID25189868
JournalAm J Hypertens
Linkwww.ncbi.nlm.nih.gov/pubmed/25189868
StudyGene-Smoking Interactions Identify Several Novel Blood Pressure Loci in the Framingham Heart Study.
Disease/TraitBlood pressure (smoking interaction)
Initial sampleUp to 6,889 individuals
Replication sampleNA
Region22q12.1
Chromosome idchr22
Chromosome position27626764
Reported geneMN1
Mapped geneLOC105372981 - MN1
Upstream gene id105372981
Downstream gene id4330
SNP gene ids
Upstream gene distance65279
Downstream gene distance121513
SNP risk allelers133980-?
SNPsrs133980
Merged0
SNP id current133980
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.00000001
Pvalue mlog8
P value text(SBP,Pack-years)
Or beta
%95 Ci
PlatformAffymetrix [2485435] (imputed)
CNVN
Mapped traitpack-years measurement, systolic blood pressure
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006526, http://www.ebi.ac.uk/efo/EFO_0006335
Study accessionGCST002587