SNP Detail For rs13393173
1.Mapping Information
Human SNP ID rs13393173
Human chromosome chr2
Human SNP position 168532581
Pig chromosome chr15
Pig SNP position 84114176
2.Annotation Information
PubMed ID18615156
JournalMol Med
Linkwww.ncbi.nlm.nih.gov/pubmed/18615156
StudyGenome-wide association scan identifies candidate polymorphisms associated with differential response to anti-TNF treatment in rheumatoid arthritis.
Disease/TraitResponse to TNF antagonist treatment
Initial sample89 European ancestry cases
Replication sampleNA
Region2q24.3
Chromosome idchr2
Chromosome position168532581
Reported geneLASS6
Mapped geneCERS6
Upstream gene id
Downstream gene id
SNP gene ids253782
Upstream gene distance
Downstream gene distance
SNP risk allelers13393173-A
SNPsrs13393173
Merged0
SNP id current13393173
Contextintron_variant
Intergenic0
Allele frequency0.12
P value0.000004
Pvalue mlog5.39794000867203
P value text
Or beta
%95 Ci
PlatformIllumina [283348]
CNVN
Mapped traitresponse to TNF antagonist
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004653
Study accessionGCST000211