Human SNP ID | rs13390641 |
---|---|
Human chromosome | chr2 |
Human SNP position | 103419975 |
Pig chromosome | chr3 |
Pig SNP position | 53297202 |
PubMed ID | 24903457 |
---|---|
Journal | BMC Med Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24903457 |
Study | Identification of a genetic variant at 2q12.1 associated with blood pressure in East-Asians by genome-wide scan including gene-environment interactions. |
Disease/Trait | Blood pressure (anthropometric measures interaction) |
Initial sample | 7,486 Korean ancestry individuals |
Replication sample | 4,544 East Asian ancestry individuals |
Region | 2q12.1 |
Chromosome id | chr2 |
Chromosome position | 103419975 |
Reported gene | TMEM182 |
Mapped gene | LOC105373519 - LOC105373520 |
Upstream gene id | 105373519 |
Downstream gene id | 105373520 |
SNP gene ids | |
Upstream gene distance | 435455 |
Downstream gene distance | 392136 |
SNP risk allele | rs13390641-A |
SNPs | rs13390641 |
Merged | 0 |
SNP id current | 13390641 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.11 |
P value | 0.00000005 |
Pvalue mlog | 7.30102999566398 |
P value text | (SBP, BMI interaction) |
Or beta | 0.59 |
%95 Ci | [0.37-0.81] unit increase |
Platform | Affymetrix [1573409] (imputed) |
CNV | N |
Mapped trait | systolic blood pressure, body mass index |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006335, http://www.ebi.ac.uk/efo/EFO_0004340 |
Study accession | GCST002471 |