SNP Detail For rs13390641
1.Mapping Information
Human SNP ID rs13390641
Human chromosome chr2
Human SNP position 103419975
Pig chromosome chr3
Pig SNP position 53297202
2.Annotation Information
PubMed ID24903457
JournalBMC Med Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24903457
StudyIdentification of a genetic variant at 2q12.1 associated with blood pressure in East-Asians by genome-wide scan including gene-environment interactions.
Disease/TraitBlood pressure (anthropometric measures interaction)
Initial sample7,486 Korean ancestry individuals
Replication sample4,544 East Asian ancestry individuals
Region2q12.1
Chromosome idchr2
Chromosome position103419975
Reported geneTMEM182
Mapped geneLOC105373519 - LOC105373520
Upstream gene id105373519
Downstream gene id105373520
SNP gene ids
Upstream gene distance435455
Downstream gene distance392136
SNP risk allelers13390641-A
SNPsrs13390641
Merged0
SNP id current13390641
Contextintergenic_variant
Intergenic1
Allele frequency0.11
P value0.00000005
Pvalue mlog7.30102999566398
P value text(SBP, BMI interaction)
Or beta0.59
%95 Ci[0.37-0.81] unit increase
PlatformAffymetrix [1573409] (imputed)
CNVN
Mapped traitsystolic blood pressure, body mass index
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006335, http://www.ebi.ac.uk/efo/EFO_0004340
Study accessionGCST002471