Human SNP ID | rs1335532 |
---|---|
Human chromosome | chr1 |
Human SNP position | 116558335 |
Pig chromosome | chr4 |
Pig SNP position | 114187789 |
PubMed ID | 19525955 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19525955 |
Study | Genome-wide association study identifies new multiple sclerosis susceptibility loci on chromosomes 12 and 20. |
Disease/Trait | Multiple sclerosis |
Initial sample | 1,618 European ancestry cases, 3,413 European ancestry controls |
Replication sample | 2,256 European ancestry cases, 2,310 European ancestry controls |
Region | 1p13.1 |
Chromosome id | chr1 |
Chromosome position | 116558335 |
Reported gene | CD58 |
Mapped gene | CD58 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 965 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1335532-A |
SNPs | rs1335532 |
Merged | 0 |
SNP id current | 1335532 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.87 |
P value | 0.0000001 |
Pvalue mlog | 7 |
P value text | |
Or beta | 1.28 |
%95 Ci | [NR] |
Platform | Illumina [302098] |
CNV | N |
Mapped trait | multiple sclerosis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003885 |
Study accession | GCST000425 |
PubMed ID | 21833088 |
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/21833088 |
Study | Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis. |
Disease/Trait | Multiple sclerosis |
Initial sample | 9,772 European ancestry cases, 16,849 European ancestry controls |
Replication sample | 4,218 European ancestry cases, 7,296 European ancestry controls |
Region | 1p13.1 |
Chromosome id | chr1 |
Chromosome position | 116558335 |
Reported gene | CD58 |
Mapped gene | CD58 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 965 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1335532-A |
SNPs | rs1335532 |
Merged | 0 |
SNP id current | 1335532 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.0000000000000003 |
Pvalue mlog | 15.5228787452803 |
P value text | |
Or beta | 1.22 |
%95 Ci | [1.19-1.24] |
Platform | Illumina [465434] |
CNV | N |
Mapped trait | multiple sclerosis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003885 |
Study accession | GCST001198 |