SNP Detail For rs1334809
1.Mapping Information
Human SNP ID rs1334809
Human chromosome chr9
Human SNP position 27126417
Pig chromosome chr1
Pig SNP position 218486193
2.Annotation Information
PubMed ID23382691
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23382691
StudyLoci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.
Disease/TraitIgG glycosylation
Initial sample2,247 European ancestry individuals
Replication sampleNA
Region9p21.2
Chromosome idchr9
Chromosome position27126417
Reported geneNR
Mapped geneTEK
Upstream gene id
Downstream gene id
SNP gene ids7010
Upstream gene distance
Downstream gene distance
SNP risk allelers1334809-G
SNPsrs1334809
Merged0
SNP id current1334809
Contextintron_variant
Intergenic0
Allele frequency0.884652631578947
P value0.000008
Pvalue mlog5.09691001300805
P value text(IGP2)
Or beta0.2206
%95 Ci[0.12-0.32] unit increase
PlatformIllumina [~ 2500000] (imputed)
CNVN
Mapped traitserum IgG glycosylation measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005193
Study accessionGCST001848